Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   O4J57_RS18065 Genome accession   NZ_CP114772
Coordinates   3774654..3775277 (-) Length   207 a.a.
NCBI ID   WP_032688494.1    Uniprot ID   A0A2X2DYW5
Organism   Raoultella planticola strain RP_3045     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3769654..3780277
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  O4J57_RS18050 (O4J57_18050) helD 3769890..3771944 (-) 2055 WP_278071010.1 DNA helicase IV -
  O4J57_RS18055 (O4J57_18055) - 3772067..3772513 (+) 447 WP_004860167.1 YccF domain-containing protein -
  O4J57_RS18060 (O4J57_18060) yccS 3772531..3774666 (+) 2136 WP_278071012.1 YccS family putative transporter -
  O4J57_RS18065 (O4J57_18065) sxy/tfoX 3774654..3775277 (-) 624 WP_032688494.1 TfoX/Sxy family DNA transformation protein Regulator
  O4J57_RS18070 (O4J57_18070) sulA 3775738..3776247 (+) 510 WP_032688495.1 SOS-induced cell division inhibitor SulA -
  O4J57_RS18075 (O4J57_18075) ompA 3776600..3777670 (+) 1071 WP_032688496.1 porin OmpA -
  O4J57_RS18080 (O4J57_18080) matP 3777776..3778228 (-) 453 WP_004860155.1 macrodomain Ter protein MatP -
  O4J57_RS18085 (O4J57_18085) - 3778414..3780171 (+) 1758 WP_278071017.1 Lon protease family protein -

Sequence

Protein


Download         Length: 207 a.a.        Molecular weight: 23308.02 Da        Isoelectric Point: 9.7117

>NTDB_id=767031 O4J57_RS18065 WP_032688494.1 3774654..3775277(-) (sxy/tfoX) [Raoultella planticola strain RP_3045]
MKKMSSLRFHQLQECLSPLGKISCRPLFGGYSLAIDDTVFAMVAEGEIYLKICEQSAEYRVVHATPLLTMRKNGRPVLLK
YYQVDETLWGDSKTLFNLSASSLQSARNEKRLQHASGRLKDLPNISFHMELLLINAGVSDEKMLRQFGAEKVWLKLRESN
KALTLNVLYALEGAIAGVHSAALPTQRRQELKVWAGSQHKNIDLYSG

Nucleotide


Download         Length: 624 bp        

>NTDB_id=767031 O4J57_RS18065 WP_032688494.1 3774654..3775277(-) (sxy/tfoX) [Raoultella planticola strain RP_3045]
ATGAAGAAAATGTCATCTTTACGGTTCCATCAACTCCAGGAATGTTTATCTCCACTCGGCAAAATAAGCTGTCGCCCGCT
CTTTGGCGGCTATAGCCTTGCCATAGACGATACCGTTTTTGCCATGGTCGCCGAGGGCGAAATCTATCTTAAAATTTGTG
AGCAGAGCGCGGAATATCGCGTTGTGCATGCCACTCCACTCTTGACGATGCGAAAAAATGGTCGCCCGGTCTTACTGAAA
TATTATCAGGTTGACGAGACCCTCTGGGGGGATAGCAAAACGCTTTTCAATCTATCGGCGTCCTCATTACAAAGTGCACG
CAATGAAAAGCGTCTACAGCATGCGTCCGGAAGATTAAAAGATCTCCCGAATATCAGTTTTCATATGGAGCTGCTGTTGA
TTAACGCAGGCGTGAGCGATGAAAAAATGCTCCGTCAGTTTGGTGCGGAGAAAGTCTGGTTGAAATTGCGGGAATCAAAC
AAAGCACTCACGTTGAATGTTCTCTATGCGCTGGAAGGGGCTATTGCCGGAGTGCATTCCGCAGCGCTCCCGACGCAGCG
GCGTCAGGAGCTTAAGGTATGGGCCGGCAGCCAGCACAAAAATATCGATCTTTACTCGGGTTGA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(117-194)

TfoX N-terminal domain (TfoX_N)

(14-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2X2DYW5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

52.284

95.169

0.498