Detailed information NTG0767016

Bioinformatically predicted

Overview

• Name: comM
• Type: Machinery gene
• Locus tag: O3276_RS22230
• Genome accession: NZ_CP114771
• Coordinates: 5315698..5316762 (+)
• Length: 354 a.a.
• NCBI ID: WP_101745016.1
• Uniprot ID: -
• Organism: Endozoicomonas sp. GU-1 strain Ap1-2
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 5310698..5321762

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
O3276_RS22215 (O3276_22215)	rpmE	5311287..5311502 (+)	216	WP_101745013.1	50S ribosomal protein L31	-
O3276_RS22220 (O3276_22220)	-	5311665..5312921 (+)	1257	WP_269673262.1	malic enzyme-like NAD(P)-binding protein	-
O3276_RS22225 (O3276_22225)	-	5312928..5315399 (-)	2472	WP_269673263.1	penicillin-binding protein 1A	-
O3276_RS22230 (O3276_22230)	comM	5315698..5316762 (+)	1065	WP_101745016.1	pilus assembly protein PilM	Machinery gene
O3276_RS22235 (O3276_22235)	-	5316762..5317325 (+)	564	WP_269673264.1	PilN domain-containing protein	-
O3276_RS22240 (O3276_22240)	-	5317322..5317933 (+)	612	WP_269673265.1	type 4a pilus biogenesis protein PilO	-
O3276_RS22245 (O3276_22245)	-	5317930..5318466 (+)	537	WP_269673266.1	pilus assembly protein PilP	-
O3276_RS22250 (O3276_22250)	pilQ	5318721..5320763 (+)	2043	WP_269673267.1	type IV pilus secretin PilQ family protein	Machinery gene
O3276_RS22255 (O3276_22255)	aroK	5321054..5321575 (+)	522	WP_101745020.1	shikimate kinase AroK	-

Sequence

Protein

• Length: 354 a.a.
• Molecular weight: 38261.65 Da
• Isoelectric Point: 4.2786

>NTDB_id=767016 O3276_RS22230 WP_101745016.1 5315698..5316762(+) (comM) [Endozoicomonas sp. GU-1 strain Ap1-2]
MLGLLKKKSNAVLGVDISSTSVKVIELGLKGSVYRVEAFCVEPLPPGAVVENNIHEVDVIGEAVARALSQSRTGLKNAAV
AVSGAAVITKTIDMDASLSEDEMETQISVEADQYIPYAMDEVAIDFEVQGLNEKNPERVEVLLAACRRDNVEMREEALRL
GGLTARVVDVEAFAMERACELIDGQLDLPDQDPVLAIVDIGATKTTLNVISRGKTVYTREQLFGGRQLTDEIQRRYGLTP
EEAEKAKCKGGLPDDYEPEVLEPFRETVVQQVSRSLQFFYSSSQFNDVDAIALVGGSASIPGMAEMIQDKLGVPTRLANP
FAGMSMAGKVDKDQLATEAPALMIACGLAMRSFD

Nucleotide

• Length: 1065 bp

>NTDB_id=767016 O3276_RS22230 WP_101745016.1 5315698..5316762(+) (comM) [Endozoicomonas sp. GU-1 strain Ap1-2]
GTGTTAGGGCTGCTGAAGAAAAAATCAAATGCCGTGTTAGGGGTGGATATAAGCTCGACATCTGTCAAAGTCATTGAGTT
AGGGCTGAAAGGCAGTGTTTACCGGGTCGAAGCTTTCTGTGTTGAGCCCCTTCCGCCAGGAGCCGTGGTTGAAAATAATA
TTCATGAAGTTGATGTCATTGGTGAAGCCGTTGCAAGAGCTCTCTCCCAATCCAGAACTGGCCTGAAAAACGCCGCCGTT
GCGGTGTCAGGCGCTGCCGTTATCACCAAAACCATCGATATGGATGCTTCCCTCAGTGAAGATGAGATGGAAACCCAGAT
TTCTGTTGAGGCAGATCAGTATATTCCCTACGCCATGGATGAAGTGGCCATCGACTTTGAAGTTCAGGGTCTGAACGAAA
AAAATCCCGAGCGGGTTGAAGTTTTGCTGGCAGCCTGCCGTCGTGACAATGTTGAAATGCGCGAAGAGGCACTTCGACTT
GGTGGATTAACGGCCAGGGTTGTTGATGTCGAAGCCTTTGCCATGGAGCGAGCGTGCGAATTGATTGATGGCCAGCTTGA
CCTGCCAGATCAGGATCCGGTGCTGGCTATCGTCGATATTGGTGCCACGAAAACCACACTGAATGTGATCAGCCGGGGTA
AAACCGTATACACCCGTGAGCAGTTATTCGGTGGACGGCAGTTGACTGATGAGATTCAGCGCCGTTACGGGCTCACCCCT
GAAGAAGCCGAGAAAGCCAAGTGTAAAGGGGGGCTGCCTGATGATTATGAACCTGAAGTTCTGGAGCCCTTCCGGGAAAC
GGTGGTTCAGCAGGTATCACGTTCATTGCAATTCTTTTATTCATCCAGCCAGTTCAATGATGTGGATGCCATTGCCCTGG
TAGGAGGATCTGCATCAATCCCGGGTATGGCGGAAATGATTCAGGACAAACTGGGGGTCCCGACCAGGCTGGCAAATCCT
TTTGCCGGAATGTCCATGGCCGGGAAAGTGGATAAGGACCAACTGGCCACTGAGGCCCCGGCGCTGATGATCGCCTGTGG
CCTTGCCATGAGGAGTTTCGACTGA

Domains

Predicted by InterproScan.

• Type IV pilus assembly protein PilM; (PilM_2) (14-353)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comM	Acinetobacter nosocomialis M2	51.977	100	0.52
pilM	Acinetobacter baumannii D1279779	51.695	100	0.517
comM	Acinetobacter baylyi ADP1	48.588	100	0.486
pilM	Legionella pneumophila strain ERS1305867	43.503	100	0.435