Detailed information    

insolico Bioinformatically predicted

Overview

Name   recQ   Type   Machinery gene
Locus tag   QNK06_RS10375 Genome accession   NZ_CP126097
Coordinates   2053273..2055048 (-) Length   591 a.a.
NCBI ID   WP_283934422.1    Uniprot ID   -
Organism   Bacillus subtilis strain KF24     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2048273..2060048
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QNK06_RS10355 (QNK06_10355) desE 2048646..2049704 (+) 1059 WP_004399588.1 fatty acid desaturase DesE -
  QNK06_RS10360 (QNK06_10360) desK 2049824..2050936 (+) 1113 WP_283934421.1 two-component sensor histidine kinase DesK -
  QNK06_RS10365 (QNK06_10365) desR 2050955..2051554 (+) 600 WP_004399356.1 two-component system response regulator DesR -
  QNK06_RS10370 (QNK06_10370) walL 2052162..2053025 (-) 864 WP_021481459.1 3D domain-containing protein -
  QNK06_RS10375 (QNK06_10375) recQ 2053273..2055048 (-) 1776 WP_283934422.1 DNA helicase RecQ Machinery gene
  QNK06_RS10385 (QNK06_10385) azoJ 2055609..2056235 (-) 627 WP_003231260.1 FMN-dependent NADH-azoreductase AzoJ -
  QNK06_RS10390 (QNK06_10390) yocK 2056387..2056878 (-) 492 WP_268749886.1 TraR/DksA family transcriptional regulator -
  QNK06_RS10395 (QNK06_10395) - 2056953..2057285 (-) 333 WP_064911727.1 hypothetical protein -
  QNK06_RS10400 (QNK06_10400) - 2057363..2057590 (+) 228 WP_015383862.1 hypothetical protein -
  QNK06_RS10405 (QNK06_10405) yocM 2057577..2058053 (-) 477 WP_085187518.1 salt stress-responsive protein YocM -
  QNK06_RS10410 (QNK06_10410) - 2058120..2058383 (+) 264 WP_004399338.1 hypothetical protein -
  QNK06_RS10415 (QNK06_10415) - 2058388..2058621 (+) 234 WP_003231251.1 hypothetical protein -
  QNK06_RS10420 (QNK06_10420) yozO 2058701..2059045 (-) 345 WP_283934423.1 PH domain-containing protein -
  QNK06_RS10425 (QNK06_10425) yozC 2059402..2059605 (-) 204 WP_003231245.1 DUF6501 family protein -

Sequence

Protein


Download         Length: 591 a.a.        Molecular weight: 67432.93 Da        Isoelectric Point: 6.2909

>NTDB_id=766972 QNK06_RS10375 WP_283934422.1 2053273..2055048(-) (recQ) [Bacillus subtilis strain KF24]
MLHRAQSLLAHYFGYEKFRSGQDEAIRLVTEARQNTACIMPTGGGKSICYQIPALMFEGTTIVISPLISLMKDQVDALEE
AGINAAYINSTQSNQEIYERLNGLKEGAYKLFYITPERLTSTEFIRILQGIDVPLVAIDEAHCISQWGHDFRPSYRNIEI
LFRELHDKPVIMALTATATPEVHDDICKQLHIQKENTVYTGFSRENLTFKVVKGENKDRFIDEYVQNNRHEAGIVYTATR
KEADRIYERLKRKQVRAGRYHGGMADDERKEQQERFLNDELQVMVATSAFGMGIDKSNIRFVLHAQIPKDMESYYQEAGR
AGRDGLASECVLLFSPQDIMVQRFLIEQSEHEEKQKQDLKKLRQMVDYCHTEDCLQRFILMYFGEKEPDACGQCGNCTDT
RAAHDVTREAQMVLSCIIRMKERFGKTMVAQVLAGSKNKKVLENGFSDLSTYGILKHQSVGEISDFIEFLISDDFIRMSD
GTFPTLFVSSKGRNVLKGELSVARKEALKAAAITENDELFERLRMVRKEIAAEQGVPPFVVFSDQTLKEMSGKQPVNDDE
LLSIKGVGEQKRAKYGRLFLQEIQTYARMTD

Nucleotide


Download         Length: 1776 bp        

>NTDB_id=766972 QNK06_RS10375 WP_283934422.1 2053273..2055048(-) (recQ) [Bacillus subtilis strain KF24]
ATGTTACATAGAGCCCAATCCCTTCTGGCTCATTATTTTGGTTATGAGAAGTTTCGGAGCGGCCAAGATGAAGCGATCCG
CTTGGTGACGGAAGCGAGGCAAAATACGGCCTGCATTATGCCGACGGGAGGCGGCAAATCGATTTGCTATCAGATTCCGG
CATTAATGTTTGAAGGGACGACGATCGTCATTTCACCGTTGATTTCCTTGATGAAGGATCAAGTTGATGCGTTAGAAGAA
GCGGGGATTAACGCCGCCTACATTAACAGCACACAATCCAATCAGGAAATATATGAGAGGCTGAACGGACTCAAAGAAGG
AGCTTATAAGCTTTTTTACATTACACCGGAGCGACTAACGTCCACAGAGTTTATACGGATTTTGCAGGGCATAGATGTTC
CTTTGGTCGCAATAGACGAGGCGCACTGTATTTCTCAATGGGGCCATGATTTCAGGCCAAGCTACAGGAATATTGAAATC
TTGTTCCGTGAATTACACGACAAGCCTGTTATCATGGCGTTAACAGCAACAGCCACACCCGAGGTTCATGATGATATTTG
CAAACAGCTGCATATTCAAAAAGAAAACACGGTATATACCGGATTTTCCCGAGAGAATTTAACCTTTAAAGTAGTAAAAG
GAGAAAATAAAGATCGGTTTATAGACGAATATGTGCAAAACAACAGGCATGAAGCAGGAATTGTCTATACAGCGACCAGA
AAAGAAGCTGATCGGATATATGAGAGATTGAAACGAAAGCAGGTCAGGGCCGGCAGGTATCATGGAGGTATGGCTGATGA
TGAGAGAAAAGAGCAGCAGGAAAGGTTTCTTAATGATGAGCTTCAAGTGATGGTGGCAACCTCTGCTTTTGGAATGGGTA
TTGATAAATCAAATATCAGATTTGTTCTGCATGCACAAATCCCGAAAGATATGGAAAGCTATTATCAAGAGGCAGGACGA
GCTGGACGGGACGGTCTTGCCAGTGAATGTGTTCTCCTGTTTTCACCGCAGGATATTATGGTGCAGCGTTTCTTAATTGA
GCAATCAGAACATGAAGAGAAACAAAAGCAGGATTTAAAAAAGCTGAGACAAATGGTCGACTACTGTCATACGGAAGATT
GTCTGCAGCGTTTTATCCTTATGTATTTCGGAGAAAAGGAGCCTGATGCGTGCGGACAGTGCGGAAACTGTACCGATACA
AGAGCGGCCCATGACGTGACGCGGGAGGCGCAAATGGTCTTATCTTGTATCATTCGCATGAAAGAACGGTTTGGCAAGAC
GATGGTTGCACAGGTGCTTGCCGGCTCCAAAAATAAAAAAGTTCTTGAAAACGGCTTTTCCGACCTTTCAACATACGGGA
TATTAAAACACCAATCCGTTGGCGAAATCAGCGATTTTATCGAATTTCTTATTTCTGACGACTTCATCAGGATGTCAGAC
GGAACGTTTCCGACTCTTTTTGTCAGCAGTAAAGGAAGGAATGTGCTGAAAGGAGAATTATCAGTAGCGAGAAAAGAAGC
GTTAAAAGCGGCAGCGATTACTGAAAATGACGAGCTATTTGAACGATTGCGCATGGTTCGGAAAGAAATTGCGGCTGAGC
AGGGTGTTCCGCCATTTGTTGTTTTCTCTGACCAAACGTTAAAAGAAATGTCAGGAAAACAGCCCGTAAATGATGATGAA
CTTTTGTCTATAAAAGGAGTCGGAGAACAAAAAAGAGCAAAATACGGCCGGCTTTTTTTACAAGAAATACAAACTTATGC
AAGGATGACAGACTAA

Domains

Predicted by InterProScan.

HRDC domain (HRDC)

(518-583)

DEAD/DEAH box helicase (DEAD)

(21-182)

RecQ zinc-binding (RecQ_Zn_bind)

(336-398)

RQC domain (RQC)

(403-507)

Helicase conserved C-terminal domain (Helicase_C)

(218-324)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recQ Bacillus subtilis subsp. subtilis str. 168

99.154

100

0.992