Detailed information    

insolico Bioinformatically predicted

Overview

Name   ymcA   Type   Regulator
Locus tag   QNK06_RS09170 Genome accession   NZ_CP126097
Coordinates   1744977..1745408 (+) Length   143 a.a.
NCBI ID   WP_003231834.1    Uniprot ID   G4NVD0
Organism   Bacillus subtilis strain KF24     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 1739977..1750408
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QNK06_RS09150 (QNK06_09150) spoVS 1740538..1740798 (+) 261 WP_003154135.1 stage V sporulation protein SpoVS -
  QNK06_RS09155 (QNK06_09155) tdh 1741064..1742107 (+) 1044 WP_014664024.1 L-threonine 3-dehydrogenase -
  QNK06_RS09160 (QNK06_09160) kbl 1742120..1743298 (+) 1179 WP_041336018.1 glycine C-acetyltransferase -
  QNK06_RS09165 (QNK06_09165) miaB 1743446..1744975 (+) 1530 WP_283934359.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -
  QNK06_RS09170 (QNK06_09170) ymcA 1744977..1745408 (+) 432 WP_003231834.1 regulatory iron-sulfur-containing complex subunit RicA Regulator
  QNK06_RS09175 (QNK06_09175) cotE 1745662..1746207 (+) 546 WP_003231833.1 outer spore coat protein CotE -
  QNK06_RS09180 (QNK06_09180) hexA 1746340..1748916 (+) 2577 WP_076457703.1 DNA mismatch repair protein MutS Machinery gene

Sequence

Protein


Download         Length: 143 a.a.        Molecular weight: 16166.27 Da        Isoelectric Point: 5.0437

>NTDB_id=766966 QNK06_RS09170 WP_003231834.1 1744977..1745408(+) (ymcA) [Bacillus subtilis strain KF24]
MTLYSKKDIVQQARNLAKMISETEEVDFFKRAEAQINENDKVSTIVNQIKALQKQAVNLKHYEKHEALKQVEAKIDALQE
ELEEIPVIQEFRDSQMEVNDLLQLVAHTISNQVTNEIITSTGGDLLKGETGSKVKHSNNSCSL

Nucleotide


Download         Length: 432 bp        

>NTDB_id=766966 QNK06_RS09170 WP_003231834.1 1744977..1745408(+) (ymcA) [Bacillus subtilis strain KF24]
ATGACGCTCTACTCAAAAAAAGACATTGTGCAGCAGGCACGAAACCTTGCAAAAATGATCTCTGAAACAGAAGAGGTTGA
TTTTTTCAAACGGGCTGAAGCGCAAATCAATGAGAATGACAAAGTGTCCACAATCGTTAATCAGATTAAAGCCCTGCAAA
AGCAGGCTGTCAATCTGAAGCATTATGAAAAGCATGAAGCGCTCAAACAAGTAGAAGCAAAAATTGACGCGCTGCAAGAA
GAGCTTGAAGAGATTCCTGTTATCCAGGAATTCAGAGACTCGCAGATGGAAGTAAATGACCTACTGCAGCTCGTTGCACA
CACCATTTCCAACCAAGTCACAAATGAAATCATCACATCAACCGGAGGCGACCTGCTGAAAGGGGAAACCGGTTCAAAGG
TGAAGCATTCAAATAACAGCTGTTCTCTCTAA

Domains

Predicted by InterProScan.

Control of competence regulator ComK, YlbF/YmcA (Com_YlbF)

(9-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NVD0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ymcA Bacillus subtilis subsp. subtilis str. 168

100

100

1