Detailed information    

insolico Bioinformatically predicted

Overview

Name   sepM   Type   Regulator
Locus tag   QNK06_RS08180 Genome accession   NZ_CP126097
Coordinates   1542685..1543707 (+) Length   340 a.a.
NCBI ID   WP_128737829.1    Uniprot ID   -
Organism   Bacillus subtilis strain KF24     
Function   processing of CSP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1537685..1548707
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QNK06_RS08145 (QNK06_08145) ylbE 1537985..1538224 (+) 240 WP_003232231.1 YlbE-like family protein -
  QNK06_RS08150 (QNK06_08150) ylbF 1538340..1538789 (+) 450 WP_003221370.1 regulatory iron-sulfur-containing complex subunit RicF Regulator
  QNK06_RS08155 (QNK06_08155) ylbG 1538844..1539116 (+) 273 WP_015715839.1 YlbG family protein -
  QNK06_RS08160 (QNK06_08160) rsmD 1539439..1539993 (+) 555 WP_015483196.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  QNK06_RS08165 (QNK06_08165) coaD 1539998..1540483 (+) 486 WP_003245283.1 pantetheine-phosphate adenylyltransferase -
  QNK06_RS08170 (QNK06_08170) spoVV 1540494..1541720 (-) 1227 WP_283934334.1 dipicolinic acid transporter SpoVV -
  QNK06_RS08175 (QNK06_08175) ylbK 1541901..1542683 (+) 783 WP_064671351.1 patatin family protein -
  QNK06_RS08180 (QNK06_08180) sepM 1542685..1543707 (+) 1023 WP_128737829.1 protease DdcP Regulator
  QNK06_RS08185 (QNK06_08185) - 1543898..1544401 (-) 504 WP_206647971.1 hypothetical protein -
  QNK06_RS08190 (QNK06_08190) - 1544420..1545652 (-) 1233 WP_128737831.1 nucleotidyltransferase -
  QNK06_RS08195 (QNK06_08195) - 1545649..1545834 (-) 186 WP_003232215.1 hypothetical protein -
  QNK06_RS08200 (QNK06_08200) ylbN 1545862..1546380 (+) 519 WP_014479718.1 DUF177 domain-containing protein -
  QNK06_RS08205 (QNK06_08205) rpmF 1546402..1546581 (+) 180 WP_003154457.1 50S ribosomal protein L32 -
  QNK06_RS08210 (QNK06_08210) gerR 1546727..1547308 (+) 582 WP_015383592.1 sporulation specific transcriptional regulator GerR -
  QNK06_RS08215 (QNK06_08215) ylbP 1547365..1547847 (-) 483 WP_014476736.1 N-acetyltransferase -

Sequence

Protein


Download         Length: 340 a.a.        Molecular weight: 37550.13 Da        Isoelectric Point: 6.5347

>NTDB_id=766955 QNK06_RS08180 WP_128737829.1 1542685..1543707(+) (sepM) [Bacillus subtilis strain KF24]
MLRKKHFSWMLVILILIAVLSFIKLPYYITKPGEATELASLIKVEGGYPEKGSLSLMTVKVGPANPFTYVWAKMHPYYEI
VPDESIKEEGESDKEYMKRQLQMMKSSQENAVIAAYQKAGKKVSYSFNGIYASSVVENMPAKGKIEVGDKIISADGKNYQ
SAEKLIDYISSKKAGDKVTLKIEREEKEKRVTLTLKQFPDEPDRAGIGVSLYTDRNVKVEPDIDFEIENIGGPSAGLMMS
LEIYNQLTKPDETKGYDIAGTGTIDVDGKVGPIGGIDQKVVAADKAGKDIFFAPNQNGASNSDYKNAVKTAKDIDSNMKI
VPVDTMQDAIDYLNKLKAKS

Nucleotide


Download         Length: 1023 bp        

>NTDB_id=766955 QNK06_RS08180 WP_128737829.1 1542685..1543707(+) (sepM) [Bacillus subtilis strain KF24]
TTGCTACGTAAAAAACATTTTAGCTGGATGCTCGTCATCCTCATACTGATCGCCGTTTTATCATTTATAAAACTTCCATA
CTATATTACAAAACCGGGAGAAGCGACAGAGCTTGCTTCATTGATAAAAGTGGAGGGAGGCTACCCGGAAAAAGGAAGCC
TGTCCTTAATGACTGTTAAAGTGGGACCGGCTAATCCGTTTACATATGTGTGGGCAAAGATGCACCCTTATTATGAAATT
GTTCCTGATGAGAGCATTAAGGAGGAAGGCGAGTCAGATAAGGAGTATATGAAAAGACAGCTCCAAATGATGAAAAGCTC
GCAAGAAAATGCGGTTATAGCCGCCTATCAAAAGGCAGGAAAAAAAGTCAGCTATTCCTTTAACGGCATATACGCAAGCT
CTGTTGTAGAAAACATGCCGGCAAAAGGGAAAATAGAAGTCGGTGATAAAATCATCAGCGCAGACGGCAAAAACTATCAG
TCTGCTGAAAAGCTGATTGATTATATCAGCAGCAAAAAAGCGGGAGATAAAGTCACGTTAAAGATCGAAAGAGAAGAAAA
AGAAAAGCGTGTCACCCTTACGTTAAAACAATTTCCTGATGAGCCGGATCGGGCAGGAATCGGAGTTTCGCTTTATACAG
ACAGAAACGTGAAGGTAGAGCCTGATATTGATTTTGAAATTGAAAATATTGGCGGCCCGTCAGCAGGGTTAATGATGTCC
CTTGAAATCTATAATCAGCTGACAAAACCAGACGAAACAAAAGGCTACGATATTGCGGGAACAGGTACCATTGATGTTGA
TGGGAAAGTAGGCCCGATCGGCGGCATTGATCAAAAAGTCGTCGCCGCAGACAAAGCCGGAAAAGACATTTTCTTCGCGC
CAAATCAAAACGGCGCCAGCAATTCTGATTATAAGAACGCAGTAAAAACAGCAAAAGATATTGATTCAAATATGAAGATT
GTGCCTGTTGATACCATGCAGGATGCGATTGATTATTTGAATAAGCTGAAAGCGAAAAGTTAA

Domains

Predicted by InterProScan.

Lon protease (S16) C-terminal proteolytic domain (Lon_C)

(232-331)

Peptidase family M50 (Peptidase_M50)

(59-220)

PDZ domain (PDZ_2)

(128-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sepM Streptococcus mutans UA159

39.143

100

0.403