Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   H7K47_RS13990 Genome accession   NZ_AP022107
Coordinates   2907715..2908344 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain WP5-S17-ESBL-11     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2902715..2913344
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H7K47_RS13975 (WP5S17E11_27190) helD 2902957..2905011 (-) 2055 WP_001315388.1 DNA helicase IV -
  H7K47_RS13980 (WP5S17E11_27200) yccF 2905134..2905580 (+) 447 WP_001261235.1 YccF domain-containing protein -
  H7K47_RS13985 (WP5S17E11_27210) yccS 2905590..2907752 (+) 2163 WP_000875044.1 YccS family putative transporter -
  H7K47_RS13990 (WP5S17E11_27220) sxy/tfoX 2907715..2908344 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  H7K47_RS13995 (WP5S17E11_27230) sulA 2908563..2909072 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  H7K47_RS14000 (WP5S17E11_27240) ompA 2909429..2910481 (+) 1053 WP_000750419.1 porin OmpA -
  H7K47_RS14005 (WP5S17E11_27250) matP 2910556..2911008 (-) 453 WP_182623215.1 macrodomain Ter protein MatP -
  H7K47_RS14010 (WP5S17E11_27260) ycbZ 2911194..2912954 (+) 1761 WP_000156526.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=76686 H7K47_RS13990 WP_000839153.1 2907715..2908344(-) (sxy/tfoX) [Escherichia coli strain WP5-S17-ESBL-11]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=76686 H7K47_RS13990 WP_000839153.1 2907715..2908344(-) (sxy/tfoX) [Escherichia coli strain WP5-S17-ESBL-11]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment