Detailed information    

insolico Bioinformatically predicted

Overview

Name   tonB2   Type   Machinery gene
Locus tag   O4M77_RS12115 Genome accession   NZ_CP114606
Coordinates   2568439..2569296 (-) Length   285 a.a.
NCBI ID   WP_171505547.1    Uniprot ID   -
Organism   Acinetobacter sp. YWS30-1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2563439..2574296
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  O4M77_RS12090 (O4M77_12080) miaB 2564403..2565860 (+) 1458 WP_004786821.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -
  O4M77_RS12095 (O4M77_12085) - 2565899..2566975 (+) 1077 WP_034171614.1 PhoH family protein -
  O4M77_RS12100 (O4M77_12090) ybeY 2567010..2567492 (+) 483 WP_159122610.1 rRNA maturation RNase YbeY -
  O4M77_RS12105 (O4M77_12095) - 2567585..2567884 (+) 300 WP_125279719.1 antibiotic biosynthesis monooxygenase family protein -
  O4M77_RS12110 (O4M77_12100) - 2568086..2568442 (+) 357 WP_252720815.1 hypothetical protein -
  O4M77_RS12115 (O4M77_12105) tonB2 2568439..2569296 (-) 858 WP_171505547.1 energy transducer TonB Machinery gene
  O4M77_RS12120 (O4M77_12110) - 2569558..2570244 (+) 687 WP_159122612.1 hypothetical protein -
  O4M77_RS12125 (O4M77_12115) - 2570452..2571111 (+) 660 WP_373683638.1 DUF3108 domain-containing protein -
  O4M77_RS12130 (O4M77_12120) - 2571202..2571777 (+) 576 WP_004786836.1 xanthine phosphoribosyltransferase -
  O4M77_RS12135 (O4M77_12125) - 2572175..2572582 (+) 408 WP_171069954.1 hypothetical protein -
  O4M77_RS12140 (O4M77_12130) wrbA 2572633..2573229 (-) 597 WP_159122613.1 NAD(P)H:quinone oxidoreductase -

Sequence

Protein


Download         Length: 285 a.a.        Molecular weight: 32735.15 Da        Isoelectric Point: 5.8653

>NTDB_id=766841 O4M77_RS12115 WP_171505547.1 2568439..2569296(-) (tonB2) [Acinetobacter sp. YWS30-1]
MPLVKAWWKDPIFNSAVFAAVILHVIFLTLEFGMPQDQESMTKEIAVSIRQTDEKIEQADFLAQTDQQGSGKFREAHRMS
SDMPAPLMEQKTGEEQQESPDMLQQQRELSFEEKVLMTTLSWQKQAEENQRKKMQEQLQSQFQAKAAMVASLEAQYLQRQ
QNFSRQQKIKTVDGIQSKQDVSAAYLEKFRQKVEFYGNRYYPDAAKQQNLAGEVRLMVILNQNGGIRAIRLIDSSGHSLL
DEAAKSSVRKAAPFGAFDAKMSDISELRIIRTWRFDPAEAEFEVR

Nucleotide


Download         Length: 858 bp        

>NTDB_id=766841 O4M77_RS12115 WP_171505547.1 2568439..2569296(-) (tonB2) [Acinetobacter sp. YWS30-1]
ATGCCTCTGGTCAAAGCCTGGTGGAAAGATCCAATTTTTAATAGCGCCGTATTTGCAGCTGTTATTTTGCACGTGATTTT
TCTCACGCTGGAATTTGGTATGCCACAAGATCAGGAGAGCATGACTAAAGAGATTGCGGTCAGTATTCGTCAAACTGATG
AAAAAATTGAGCAAGCAGATTTTCTGGCTCAAACTGATCAGCAAGGTTCAGGTAAATTTCGTGAAGCACATCGTATGTCG
AGCGATATGCCTGCACCGTTGATGGAGCAAAAGACCGGAGAAGAGCAGCAAGAAAGTCCGGACATGTTGCAACAGCAGCG
CGAATTAAGCTTTGAAGAAAAAGTACTGATGACGACTTTAAGCTGGCAAAAACAGGCGGAAGAAAATCAGCGCAAAAAAA
TGCAGGAACAGTTACAAAGTCAGTTTCAGGCCAAAGCCGCTATGGTAGCCAGTCTTGAAGCCCAATATCTGCAACGACAA
CAAAACTTCAGTCGTCAGCAAAAAATTAAAACCGTAGATGGTATCCAGTCTAAACAGGATGTCTCTGCGGCTTATCTGGA
AAAATTCCGTCAGAAAGTGGAGTTCTATGGTAACCGCTATTATCCAGACGCGGCCAAACAGCAGAATCTGGCAGGAGAGG
TACGCTTGATGGTGATCTTGAACCAGAACGGCGGAATCCGTGCAATTCGCTTAATTGACAGTTCAGGGCATAGCTTGCTA
GATGAAGCTGCAAAATCTTCAGTACGCAAGGCGGCACCGTTCGGAGCATTTGATGCCAAGATGTCGGATATTTCCGAGTT
ACGAATCATTCGAACCTGGCGTTTTGATCCGGCTGAAGCGGAGTTTGAGGTGCGTTAA

Domains

Predicted by InterproScan.

Gram-negative bacterial TonB protein C-terminal (TonB_C)

(198-275)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tonB2 Acinetobacter baumannii D1279779

73.477

97.895

0.719