Detailed information    

insolico Bioinformatically predicted

Overview

Name   priA   Type   Machinery gene
Locus tag   O4M77_RS01385 Genome accession   NZ_CP114606
Coordinates   297744..299966 (-) Length   740 a.a.
NCBI ID   WP_180011868.1    Uniprot ID   -
Organism   Acinetobacter sp. YWS30-1     
Function   DNA puliing through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 292744..304966
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  O4M77_RS01360 (O4M77_01365) - 292833..293294 (-) 462 WP_179991984.1 DUF2147 domain-containing protein -
  O4M77_RS01365 (O4M77_01370) - 293482..293943 (-) 462 WP_323713709.1 DUF2147 domain-containing protein -
  O4M77_RS01370 (O4M77_01375) - 294221..294670 (-) 450 WP_323713710.1 DUF2147 domain-containing protein -
  O4M77_RS01375 (O4M77_01380) hslO 294888..295763 (-) 876 WP_004781734.1 Hsp33 family molecular chaperone HslO -
  O4M77_RS01380 (O4M77_01385) - 295814..297670 (-) 1857 WP_323713711.1 cation:proton antiporter -
  O4M77_RS01385 (O4M77_01390) priA 297744..299966 (-) 2223 WP_180011868.1 primosomal protein N' Machinery gene
  O4M77_RS01390 (O4M77_01395) gspF 300116..301321 (+) 1206 WP_323713712.1 type II secretion system inner membrane protein GspF -
  O4M77_RS01395 (O4M77_01400) gspG 301505..301888 (+) 384 WP_240904185.1 type II secretion system major pseudopilin GspG -
  O4M77_RS01400 (O4M77_01405) - 302173..302508 (+) 336 WP_005232472.1 hypothetical protein -
  O4M77_RS01405 (O4M77_01410) lnt 302660..304219 (-) 1560 WP_302700088.1 apolipoprotein N-acyltransferase -

Sequence

Protein


Download         Length: 740 a.a.        Molecular weight: 83762.69 Da        Isoelectric Point: 8.5518

>NTDB_id=766821 O4M77_RS01385 WP_180011868.1 297744..299966(-) (priA) [Acinetobacter sp. YWS30-1]
MPNSVPVTAPVYRVRVAVPVHLFDCFDYSLSQEQYQQAEVGARVAVSFGRQNLVGVITEKLPLDAPIDPSFKLKAITELL
DDRAIINSQVLSVLTWSAQYYQFPIGEVIQTALPTLLRQGKPYNLLARNWKLLDHEAEAKVRRSERQQEAYRILKLHPVG
TTENLLNLAGIETATLKALEKKGICECVLEAQDFSPQPVQLAQMPLTANPEQKHAIQQVLKYRKQYQAFLLDGLTGSGKT
EVYLQIMEQVLKQGKQVLVLVPEIGLTPQTISRFQSRFHCHIALLHSGLNDSKRLQAWQAAETGKASIVLGTRSAIYTPM
PNLGLIILDEEHDLSFKQQEGFRYHARDVALYRGHLQQCPVLLGSATPSIDSYALVQQGKMQVLELNQRAGTALMPKIHI
LDLKVAPKQHGISLHLIEEIKKRLAKKEQVLIFLNRRGYAPVLICGSCGWQAQCPNCDANFTVHRQPYQHLHCHHCGTIH
RMPEQCPQCQHQELATLGMGTGKVEEHLNELFPDFEVIRVDRDSTSRVGSWQKIYDKIQKSEPAILLGTQMLAKGHHFPY
VTLVAILDIDSGLLSVDFRATERTAQLIVQVAGRAGRGEHKGDVYLQTLRPDHALLNTLVTENYRAFAKQTLTERQIAQM
PPFRYAVLIRCESKDQAQNTEFLQKHAALLRQYPDLVLDIWGPIPAPMERKAGRYQSHMVLLSADRARLHYYVRSWWQNL
LQDKPSNMKLTLDIDPQELS

Nucleotide


Download         Length: 2223 bp        

>NTDB_id=766821 O4M77_RS01385 WP_180011868.1 297744..299966(-) (priA) [Acinetobacter sp. YWS30-1]
ATGCCAAATTCTGTTCCCGTTACTGCCCCTGTTTATCGTGTTCGTGTTGCAGTGCCGGTGCATCTGTTTGACTGTTTTGA
CTATAGCTTGAGTCAGGAACAATATCAGCAGGCAGAAGTGGGTGCCCGAGTCGCGGTTTCTTTTGGCCGGCAAAATCTGG
TCGGCGTGATTACTGAAAAATTACCGCTAGATGCTCCGATTGATCCCAGTTTCAAACTGAAAGCAATTACCGAGCTTTTA
GATGACCGTGCCATTATCAATTCCCAGGTTTTAAGTGTATTGACCTGGTCAGCACAGTATTACCAGTTTCCTATCGGGGA
AGTGATCCAGACTGCCTTGCCGACCTTATTGCGTCAGGGCAAACCTTATAACCTGCTGGCCCGAAACTGGAAATTGCTGG
ATCATGAGGCTGAAGCCAAGGTTCGCCGTTCCGAGAGGCAACAGGAAGCCTATCGGATTCTAAAACTGCATCCGGTGGGA
ACAACTGAGAATCTCTTAAATCTGGCCGGAATAGAAACAGCGACTTTAAAAGCGCTCGAAAAAAAAGGAATTTGCGAATG
TGTCCTGGAAGCACAGGATTTTAGCCCGCAACCTGTACAACTGGCCCAGATGCCATTAACGGCCAATCCGGAACAAAAGC
ATGCGATTCAGCAAGTGCTGAAATACCGCAAGCAATATCAGGCCTTTTTACTCGATGGCCTGACTGGCAGCGGCAAAACT
GAAGTCTATCTTCAGATCATGGAACAGGTACTTAAACAGGGCAAGCAGGTACTGGTACTGGTGCCTGAAATCGGACTGAC
GCCACAAACGATTAGCCGCTTTCAGTCTCGTTTCCATTGTCATATTGCCCTGCTTCACTCTGGCCTGAATGACAGTAAAC
GCTTACAAGCCTGGCAAGCCGCTGAAACCGGTAAAGCGTCCATTGTGCTTGGCACCCGTTCTGCGATCTATACACCGATG
CCGAATCTGGGTTTGATCATTCTGGATGAAGAGCATGACCTGTCTTTTAAACAACAGGAAGGTTTTCGCTATCATGCCCG
TGATGTGGCATTGTACCGGGGACATTTACAGCAATGTCCAGTCCTCTTGGGTTCGGCCACCCCCAGCATTGACAGCTATG
CGCTGGTGCAGCAAGGCAAAATGCAGGTGCTGGAACTGAATCAACGCGCGGGTACAGCACTAATGCCAAAAATCCATATT
CTGGATTTAAAAGTGGCACCAAAGCAGCATGGCATCAGCCTGCATCTGATTGAAGAAATCAAAAAGCGCCTGGCTAAAAA
AGAACAGGTACTCATTTTCCTGAATCGTCGTGGTTATGCGCCCGTACTGATTTGTGGCAGTTGTGGCTGGCAGGCGCAGT
GTCCGAACTGTGATGCCAATTTCACTGTGCACCGGCAACCTTATCAACATCTGCATTGTCATCATTGCGGCACCATTCAT
CGTATGCCTGAACAGTGTCCGCAATGCCAGCATCAGGAGTTGGCCACTTTAGGCATGGGGACTGGAAAAGTTGAAGAACA
TCTGAATGAGCTTTTTCCAGATTTTGAAGTGATCCGGGTCGATCGCGACTCAACCAGCCGGGTCGGTAGTTGGCAAAAGA
TCTATGACAAGATTCAGAAAAGTGAGCCTGCGATTCTGCTCGGCACGCAGATGCTGGCCAAAGGCCATCATTTTCCTTAT
GTCACGCTGGTTGCAATTTTGGATATCGATTCTGGTCTTCTTAGCGTTGATTTCCGGGCCACAGAACGTACAGCACAATT
GATCGTACAGGTCGCAGGTCGTGCAGGACGTGGGGAACATAAAGGGGATGTATATTTACAGACCCTAAGACCTGATCATG
CGCTGCTGAATACCTTAGTCACTGAAAATTACCGCGCTTTTGCCAAGCAGACTTTGACCGAACGGCAAATCGCCCAGATG
CCTCCTTTTCGTTATGCCGTGCTGATTCGCTGTGAATCCAAAGATCAGGCACAAAATACCGAATTCTTACAGAAACATGC
TGCCCTGCTCAGGCAATATCCCGATCTGGTGCTGGACATCTGGGGTCCCATTCCTGCCCCGATGGAACGCAAAGCCGGAC
GCTATCAATCCCATATGGTGCTATTGTCCGCAGACCGTGCCCGTTTGCATTATTATGTCCGTAGCTGGTGGCAAAACCTG
TTACAGGATAAGCCATCCAATATGAAGCTGACACTGGATATCGATCCACAAGAACTCAGCTAA

Domains

Predicted by InterproScan.

3DNA-binding domain (3BD) (PriA_3primeBD)

(15-114)

Type III restriction enzyme, res subunit (ResIII)

(209-369)

Primosomal protein N C-terminal domain (PriA_C)

(642-736)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  priA Acinetobacter baumannii D1279779

72.605

100

0.727