Detailed information    

insolico Bioinformatically predicted

Overview

Name   hns   Type   Regulator
Locus tag   O4M77_RS01080 Genome accession   NZ_CP114606
Coordinates   226890..227216 (+) Length   108 a.a.
NCBI ID   WP_079281036.1    Uniprot ID   -
Organism   Acinetobacter sp. YWS30-1     
Function   repress the expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 221890..232216
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  O4M77_RS01055 (O4M77_01060) hemC 222565..223488 (+) 924 WP_159123732.1 hydroxymethylbilane synthase -
  O4M77_RS01060 (O4M77_01065) - 223488..224255 (+) 768 WP_180070603.1 uroporphyrinogen-III synthase -
  O4M77_RS01065 (O4M77_01070) - 224263..225102 (+) 840 WP_180057926.1 hypothetical protein -
  O4M77_RS01070 (O4M77_01075) - 225109..226302 (+) 1194 WP_180052770.1 heme biosynthesis protein HemY -
  O4M77_RS01075 (O4M77_01080) - 226310..226735 (+) 426 WP_004781650.1 acyl-CoA thioesterase -
  O4M77_RS01080 (O4M77_01085) hns 226890..227216 (+) 327 WP_079281036.1 H-NS family nucleoid-associated regulatory protein Regulator
  O4M77_RS01085 (O4M77_01090) gspN 227404..228147 (+) 744 WP_180002520.1 type II secretion system protein N -
  O4M77_RS01090 (O4M77_01095) - 228147..229004 (+) 858 WP_323713692.1 type II secretion system protein N -
  O4M77_RS01095 (O4M77_01100) gspD 229043..231295 (+) 2253 WP_323713693.1 type II secretion system secretin GspD -
  O4M77_RS01100 (O4M77_01105) - 231358..232017 (+) 660 WP_323713694.1 FHA domain-containing protein -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12368.15 Da        Isoelectric Point: 5.9497

>NTDB_id=766820 O4M77_RS01080 WP_079281036.1 226890..227216(+) (hns) [Acinetobacter sp. YWS30-1]
MMPDITNLSVEELKRLQAEAESLIALKKDQEIEDAYHQVLDIADKVGLTIEQLLEFGASKRKKTARKSVEPRYRSKSNPE
DTWTGRGKQPRWLVAELEKGAKLEDFVI

Nucleotide


Download         Length: 327 bp        

>NTDB_id=766820 O4M77_RS01080 WP_079281036.1 226890..227216(+) (hns) [Acinetobacter sp. YWS30-1]
ATGATGCCAGACATTACAAATTTATCAGTTGAAGAGTTAAAACGTTTACAAGCAGAAGCTGAGTCTTTAATTGCTTTGAA
AAAAGATCAGGAAATTGAAGATGCTTATCATCAGGTATTGGATATTGCCGACAAAGTAGGCTTAACGATTGAACAGCTTC
TTGAATTTGGTGCTTCTAAACGTAAAAAAACTGCACGTAAGTCTGTAGAGCCACGTTATCGCAGTAAAAGCAATCCGGAA
GACACCTGGACTGGTCGCGGTAAACAGCCACGCTGGTTAGTTGCTGAATTAGAGAAAGGCGCAAAACTGGAAGATTTCGT
GATCTAA

Domains

Predicted by InterproScan.

H-NS histone family (Histone_HNS)

(12-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hns Acinetobacter baumannii strain A118

77.778

100

0.778