Detailed information    

insolico Bioinformatically predicted

Overview

Name   tonB2   Type   Machinery gene
Locus tag   O4J62_RS02140 Genome accession   NZ_CP114601
Coordinates   472030..472887 (+) Length   285 a.a.
NCBI ID   WP_171062604.1    Uniprot ID   -
Organism   Acinetobacter towneri strain TT1-3_T     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 467030..477887
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  O4J62_RS02110 (O4J62_02110) wrbA 467438..468034 (+) 597 WP_026438329.1 NAD(P)H:quinone oxidoreductase -
  O4J62_RS02115 (O4J62_02115) - 468636..468794 (+) 159 WP_323712686.1 hypothetical protein -
  O4J62_RS02120 (O4J62_02120) - 468853..469254 (-) 402 WP_179988456.1 hypothetical protein -
  O4J62_RS02125 (O4J62_02125) - 469517..470092 (-) 576 WP_004976172.1 xanthine phosphoribosyltransferase -
  O4J62_RS02130 (O4J62_02130) - 470221..470934 (-) 714 WP_004976176.1 DUF3108 domain-containing protein -
  O4J62_RS02135 (O4J62_02135) - 471080..471754 (-) 675 WP_004976182.1 hypothetical protein -
  O4J62_RS02140 (O4J62_02140) tonB2 472030..472887 (+) 858 WP_171062604.1 energy transducer TonB Machinery gene
  O4J62_RS02145 (O4J62_02145) ybeY 473100..473582 (-) 483 WP_178318594.1 rRNA maturation RNase YbeY -
  O4J62_RS02150 (O4J62_02150) - 473626..474699 (-) 1074 WP_004976193.1 PhoH family protein -
  O4J62_RS02155 (O4J62_02155) miaB 474739..476193 (-) 1455 WP_004976194.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -

Sequence

Protein


Download         Length: 285 a.a.        Molecular weight: 32209.53 Da        Isoelectric Point: 6.2940

>NTDB_id=766794 O4J62_RS02140 WP_171062604.1 472030..472887(+) (tonB2) [Acinetobacter towneri strain TT1-3_T]
MPSTQDWWKDPIFAAALLVAAVLHALILAVQFAAPQQSDAAVKEIAVSVRMSDAKVEDADFLAQADQQGSGTFREEHRMS
SDMPAPMTEQSAGEQQLESLERMQQQRELNFEEKVLMTTLSWQKQAAENQRKKAMQELNSQFQAKAAMVASIEAQYLQRQ
QNFSRQQKIKTIDGIQAKQDNTAGYMEKFRQKVEFYGNRYYPEQAKAQNLAGEVRLMVILNNNGGIRAIRLIESSGHAML
DEAAKASVRKAAPFGAFDAKMKDISELRIVRTWRFDPAEAEFEVR

Nucleotide


Download         Length: 858 bp        

>NTDB_id=766794 O4J62_RS02140 WP_171062604.1 472030..472887(+) (tonB2) [Acinetobacter towneri strain TT1-3_T]
ATGCCTTCTACGCAAGATTGGTGGAAAGATCCTATTTTTGCTGCAGCGTTGCTGGTGGCTGCTGTATTGCACGCATTAAT
TTTGGCCGTGCAGTTTGCTGCACCGCAACAAAGCGATGCTGCGGTCAAAGAGATTGCGGTATCGGTACGCATGAGCGATG
CAAAAGTTGAAGATGCAGATTTCTTAGCCCAAGCCGATCAGCAAGGTTCAGGTACGTTCCGTGAAGAACATCGCATGTCG
AGTGATATGCCTGCACCCATGACTGAACAAAGTGCAGGGGAGCAGCAATTGGAAAGTTTAGAGCGTATGCAGCAACAGCG
TGAATTAAACTTTGAAGAAAAAGTATTGATGACCACGCTCAGTTGGCAAAAACAGGCTGCAGAAAATCAGCGCAAAAAAG
CCATGCAGGAGTTGAATAGCCAATTCCAAGCTAAGGCTGCCATGGTCGCCAGTATTGAAGCGCAATATTTACAACGCCAA
CAAAATTTTAGCCGTCAGCAAAAAATTAAAACCATTGATGGGATTCAGGCCAAGCAAGACAACACCGCTGGTTATATGGA
AAAATTCCGTCAAAAAGTCGAATTTTATGGTAACCGTTATTATCCAGAACAAGCCAAAGCACAGAATTTGGCAGGCGAAG
TACGTTTAATGGTGATTTTGAACAACAATGGTGGGATTCGTGCCATTCGTTTAATTGAAAGTTCAGGACATGCCATGCTA
GATGAAGCAGCCAAAGCTTCGGTGCGTAAAGCCGCACCTTTTGGTGCATTTGATGCCAAAATGAAAGATATTTCTGAATT
GCGGATTGTACGGACGTGGCGTTTTGACCCTGCTGAAGCTGAGTTTGAGGTGCGCTAG

Domains

Predicted by InterproScan.

Gram-negative bacterial TonB protein C-terminal (TonB_C)

(198-275)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tonB2 Acinetobacter baumannii D1279779

72.043

97.895

0.705