Detailed information NTG0766762

Bioinformatically predicted

Overview

• Name: comM
• Type: Machinery gene
• Locus tag: O5966_RS00950
• Genome accession: NZ_CP114600
• Coordinates: 198774..200294 (-)
• Length: 506 a.a.
• NCBI ID: WP_011257184.1
• Uniprot ID: A0A854CKZ6
• Organism: Xanthomonas oryzae pv. oryzae strain LA20
• Function: ssDNA binding (predicted from homology) DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
IScluster/Tn	190937..198680	198774..200294	flank	94

Gene organization within MGE regions

Location: 190937..200294

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
O5966_RS00915 (O5966_00915)	-	191829..192017 (+)	189	Protein_177	transposase	-
O5966_RS00920 (O5966_00920)	-	192106..193071 (+)	966	WP_117231622.1	IS1595-like element ISXo5 family transposase	-
O5966_RS00925 (O5966_00925)	-	193078..194079 (+)	1002	Protein_179	IS256-like element IS1113 family transposase	-
O5966_RS00930 (O5966_00930)	-	194109..194559 (-)	451	Protein_180	IS1595-like element ISXo5 family transposase	-
O5966_RS00935 (O5966_00935)	-	194648..195688 (+)	1041	Protein_181	IS5-like element ISXoo5 family transposase	-
O5966_RS00940 (O5966_00940)	-	195782..197101 (+)	1320	WP_117231466.1	IS701-like element ISXo15 family transposase	-
O5966_RS00945 (O5966_00945)	-	197304..198680 (+)	1377	Protein_183	IS5 family transposase	-
O5966_RS00950 (O5966_00950)	comM	198774..200294 (-)	1521	WP_011257184.1	YifB family Mg chelatase-like AAA ATPase	Machinery gene

Sequence

Protein

• Length: 506 a.a.
• Molecular weight: 54090.89 Da
• Isoelectric Point: 8.2767

>NTDB_id=766762 O5966_RS00950 WP_011257184.1 198774..200294(-) (comM) [Xanthomonas oryzae pv. oryzae strain LA20]
MSLALVHSRARVGVHAPEVRVEVHLSGGLPSTQMVGLPEAAVRESRERVRAALLCAQFEFPARRITINLAPADLPKEGGR
FDLPIALGILAASGQIDRQALGDYEFLGELALTGELRGIDGVLPAALAAAQAGRRLIVPLANGAEAAIAEHVEAFTARTL
LEVCATLNGSQKAPAAELAVQALGARALPDMADVRGQPHARRALEIAAAGGHHLLLVGSPGCGKTLLASRLPGLLPEASE
AEALETAAITSISGRGLDLARWRQRPYRAPHHTASAVALVGGGTHPRPGEISLAHNGVLFLDELPEWQRQTLEVLREPLE
SGLVTISRAARSVDFPARFQLVAAMNPCPCGWAGDGSGRCRCSSDSIRRYRSRISGPLLDRIDLHVEVPRLPPQALRSGN
LGEDSASVRCRVVAARQRQLARGALPNAQLDQPDTDRHCRLQHDDQVLLERAIEHLQLSARSMHRILRVARTIADLHDSA
DIATRHLTEAIGYRKLDRALSAASAA

Nucleotide

• Length: 1521 bp

>NTDB_id=766762 O5966_RS00950 WP_011257184.1 198774..200294(-) (comM) [Xanthomonas oryzae pv. oryzae strain LA20]
ATGAGTCTGGCGTTGGTGCACAGCCGTGCCCGCGTGGGGGTGCACGCGCCCGAAGTTCGGGTGGAAGTGCATCTCTCCGG
CGGTCTCCCCTCCACCCAGATGGTGGGCCTGCCCGAAGCGGCAGTGCGCGAATCGCGCGAACGCGTACGTGCCGCGCTGC
TTTGCGCGCAGTTCGAATTCCCCGCACGGCGCATTACCATCAATCTGGCGCCGGCCGATCTGCCTAAGGAAGGCGGACGG
TTCGATTTGCCGATCGCCCTCGGCATCCTGGCTGCCAGCGGGCAAATCGACCGCCAGGCCCTGGGCGATTACGAATTCCT
CGGCGAGCTTGCGCTTACCGGCGAGCTGCGCGGCATCGATGGCGTGCTGCCCGCGGCGCTGGCGGCCGCGCAGGCAGGGC
GACGGCTGATCGTGCCGCTTGCCAACGGTGCCGAAGCGGCGATTGCCGAGCACGTCGAAGCCTTCACCGCACGCACGCTG
CTTGAGGTGTGCGCGACGCTCAACGGCAGCCAGAAAGCACCTGCCGCCGAATTGGCGGTGCAGGCGCTCGGGGCCCGTGC
CCTGCCCGACATGGCCGATGTGCGCGGGCAACCGCACGCCCGCCGCGCGCTGGAGATCGCCGCTGCCGGTGGGCATCATC
TCCTTCTGGTCGGCAGCCCTGGCTGCGGCAAGACCCTGTTGGCCTCGCGCCTGCCTGGGCTATTGCCCGAAGCCAGCGAA
GCCGAAGCGCTGGAAACCGCGGCCATTACCTCCATCAGCGGCCGCGGACTGGATCTGGCCCGCTGGCGGCAGCGGCCCTA
CCGGGCTCCTCACCACACCGCCAGCGCAGTCGCCTTGGTTGGCGGTGGCACGCATCCGCGCCCCGGCGAAATCTCGCTGG
CCCACAACGGTGTCTTGTTTCTGGACGAGTTGCCCGAGTGGCAACGGCAGACACTCGAGGTGCTGCGCGAACCGTTGGAA
TCGGGCCTGGTCACGATCTCACGCGCGGCGCGCAGCGTCGACTTCCCTGCACGCTTCCAGCTGGTCGCTGCGATGAACCC
ATGCCCATGCGGTTGGGCAGGCGACGGCAGCGGGCGCTGCCGCTGCAGCAGCGACAGCATCCGCCGCTATCGCAGCCGTA
TCTCCGGCCCCTTGCTGGACCGCATCGATCTGCATGTCGAAGTGCCACGCCTACCACCGCAAGCGCTGCGCAGCGGCAAC
CTCGGCGAGGACAGCGCCAGCGTGCGTTGCCGCGTGGTCGCCGCGCGGCAACGCCAGCTTGCGCGCGGAGCGCTGCCCAA
TGCGCAACTGGATCAGCCCGACACCGACCGCCATTGCCGTCTGCAGCACGACGACCAAGTGCTGCTCGAGCGCGCCATCG
AACACCTGCAGCTGTCTGCACGCTCGATGCATCGCATACTGCGCGTGGCACGCACCATCGCCGATCTCCACGACAGCGCA
GACATCGCCACGCGCCATCTCACCGAAGCGATCGGCTATCGCAAACTGGATCGCGCACTGAGTGCCGCCAGCGCGGCGTA
G

Domains

Predicted by InterproScan.

• Subunit ChlI of Mg-chelatase (ChlI) (21-142)

• Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C) (402-494)

• Magnesium chelatase, subunit ChlI (Mg_chelatase) (190-394)

3D structure

• AlphaFold DB: A0A854CKZ6

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comM	Vibrio cholerae strain A1552	56.522	100	0.565
comM	Haemophilus influenzae Rd KW20	55.186	100	0.557
comM	Glaesserella parasuis strain SC1401	54.241	100	0.543
comM	Vibrio campbellii strain DS40M4	53.953	100	0.54
comM	Legionella pneumophila str. Paris	51.71	98.221	0.508
comM	Legionella pneumophila strain ERS1305867	51.71	98.221	0.508
RA0C_RS07335	Riemerella anatipestifer ATCC 11845 = DSM 15868	46.063	100	0.462