Detailed information    

insolico Bioinformatically predicted

Overview

Name   braR   Type   Regulator
Locus tag   QNK02_RS20315 Genome accession   NZ_CP126083
Coordinates   3948480..3949169 (-) Length   229 a.a.
NCBI ID   WP_003243527.1    Uniprot ID   P42421
Organism   Bacillus subtilis strain C1_9     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3943480..3954169
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QNK02_RS20295 (QNK02_20295) yxeA 3944385..3944732 (-) 348 WP_021481023.1 YxeA family protein -
  QNK02_RS20300 (QNK02_20300) yxdM 3944746..3946614 (-) 1869 WP_017696088.1 ABC transporter permease YxdM -
  QNK02_RS20305 (QNK02_20305) yxdL 3946589..3947362 (-) 774 WP_041850316.1 ABC transporter ATP-binding protein YxdL -
  QNK02_RS20310 (QNK02_20310) yxdK 3947506..3948483 (-) 978 WP_021481026.1 two-component system sensor histidine kinase YxdK -
  QNK02_RS20315 (QNK02_20315) braR 3948480..3949169 (-) 690 WP_003243527.1 two-component system response regulator YxdJ Regulator
  QNK02_RS20320 (QNK02_20320) iolJ 3949277..3950149 (-) 873 WP_014478478.1 6-phospho-5-dehydro-2-deoxy-D-gluconate aldolase -
  QNK02_RS20325 (QNK02_20325) iolI 3950170..3951006 (-) 837 WP_015483926.1 2-keto-myo-inositol isomerase -
  QNK02_RS20330 (QNK02_20330) iolH 3951092..3951961 (-) 870 WP_015250852.1 sugar phosphate isomerase/epimerase -
  QNK02_RS20335 (QNK02_20335) iolG 3951981..3953015 (-) 1035 WP_003244482.1 bifunctional inositol 2-dehydrogenase/D-chiro-inositol 1-dehydrogenase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 26600.34 Da        Isoelectric Point: 4.8564

>NTDB_id=766733 QNK02_RS20315 WP_003243527.1 3948480..3949169(-) (braR) [Bacillus subtilis strain C1_9]
MNKIMIVEDSEDIRGLLQNYLEKYGYQTVVAADFTAVLDVFLREKPDVVLLDINLPAYDGYYWCRQIRQHSTSPIIFISA
RSGEMDQVMAIENGGDDYIEKPFSYDIVLAKIKSQIRRAYGEYAAKQGEKVVEYAGVQLFVERFELRFQDEKSELSKKES
KLLEVLLERGEKVTSRDRLMEKTWDTDIFIDDNTLNVYITRLRKKLRELNAPVSIEAVRGEGYQLRAQS

Nucleotide


Download         Length: 690 bp        

>NTDB_id=766733 QNK02_RS20315 WP_003243527.1 3948480..3949169(-) (braR) [Bacillus subtilis strain C1_9]
TTGAATAAAATCATGATTGTGGAAGACAGTGAAGACATTCGCGGACTATTGCAGAATTACCTTGAAAAATACGGATATCA
AACAGTGGTCGCCGCGGATTTTACAGCTGTTCTTGATGTCTTTTTGCGGGAAAAGCCCGATGTGGTGCTGCTTGATATCA
ATTTGCCGGCATATGACGGATATTATTGGTGCCGGCAGATCCGCCAGCACTCCACAAGCCCGATCATCTTTATTTCTGCC
AGAAGCGGGGAAATGGATCAGGTGATGGCGATTGAAAATGGGGGAGACGATTATATCGAAAAACCGTTTTCTTATGATAT
TGTGCTTGCGAAAATCAAAAGCCAGATCCGGAGGGCGTACGGGGAGTACGCCGCAAAGCAGGGAGAGAAAGTGGTTGAAT
ATGCTGGCGTTCAGCTCTTTGTGGAACGGTTTGAACTGCGTTTTCAGGATGAAAAAAGCGAGCTTTCTAAAAAAGAAAGC
AAGCTTTTGGAAGTGCTGCTTGAGCGGGGAGAAAAGGTGACGAGTCGGGACCGTCTCATGGAAAAGACGTGGGACACCGA
CATATTCATCGATGATAATACACTTAACGTGTATATCACGCGGCTCAGAAAAAAACTGCGGGAGCTGAATGCGCCTGTTT
CTATTGAAGCGGTGCGGGGCGAAGGCTACCAGCTGAGGGCGCAGTCATGA

Domains

Predicted by InterProScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(151-225)

Response regulator receiver domain (Response_reg)

(4-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P42421

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  braR Staphylococcus aureus N315

41.704

97.38

0.406