Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   O3296_RS14505 Genome accession   NZ_CP114592
Coordinates   2957606..2958235 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain WEC     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2952606..2963235
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  O3296_RS14490 (O3296_14490) helD 2952848..2954902 (-) 2055 WP_001297106.1 DNA helicase IV -
  O3296_RS14495 (O3296_14495) yccF 2955025..2955471 (+) 447 WP_001261235.1 YccF domain-containing protein -
  O3296_RS14500 (O3296_14500) yccS 2955481..2957643 (+) 2163 WP_000875015.1 YccS family putative transporter -
  O3296_RS14505 (O3296_14505) sxy/tfoX 2957606..2958235 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  O3296_RS14510 (O3296_14510) sulA 2958454..2958963 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  O3296_RS14515 (O3296_14515) ompA 2959320..2960372 (+) 1053 WP_000750419.1 porin OmpA -
  O3296_RS14520 (O3296_14520) matP 2960448..2960900 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  O3296_RS14525 (O3296_14525) ycbZ 2961086..2962846 (+) 1761 WP_063625537.1 AAA family ATPase -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=766715 O3296_RS14505 WP_000839153.1 2957606..2958235(-) (sxy/tfoX) [Escherichia coli strain WEC]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=766715 O3296_RS14505 WP_000839153.1 2957606..2958235(-) (sxy/tfoX) [Escherichia coli strain WEC]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1