Detailed information    

insolico Bioinformatically predicted

Overview


Name   comQ   Type   Regulator
Locus tag   QNK02_RS16080 Genome accession   NZ_CP126083
Coordinates   3098646..3099506 (-) Length   286 a.a.
NCBI ID   WP_041850585.1    Uniprot ID   -
Organism   Bacillus subtilis strain C1_9     
Function   modification of ComX; production of ComX (predicted from homology)   
Competence regulation

Genomic Context


Location: 3093646..3104506
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QNK02_RS16045 (QNK02_16045) mrpE 3093876..3094352 (+) 477 WP_003228815.1 Na+/H+ antiporter subunit E -
  QNK02_RS16050 (QNK02_16050) mrpF 3094352..3094636 (+) 285 WP_003228814.1 Na(+)/H(+) antiporter subunit F1 -
  QNK02_RS16055 (QNK02_16055) mnhG 3094620..3094994 (+) 375 WP_014477830.1 monovalent cation/H(+) antiporter subunit G -
  QNK02_RS16060 (QNK02_16060) yuxO 3095033..3095413 (-) 381 WP_014477831.1 hotdog fold thioesterase -
  QNK02_RS16065 (QNK02_16065) comA 3095432..3096076 (-) 645 WP_003220716.1 two-component system response regulator ComA Regulator
  QNK02_RS16070 (QNK02_16070) comP 3096157..3098457 (-) 2301 WP_041850586.1 histidine kinase Regulator
  QNK02_RS16075 (QNK02_16075) comX 3098469..3098633 (-) 165 WP_015384519.1 competence pheromone ComX -
  QNK02_RS16080 (QNK02_16080) comQ 3098646..3099506 (-) 861 WP_041850585.1 polyprenyl synthetase family protein Regulator
  QNK02_RS16085 (QNK02_16085) degQ 3099690..3099830 (-) 141 WP_003220708.1 degradation enzyme regulation protein DegQ Regulator
  QNK02_RS16090 (QNK02_16090) - 3100052..3100114 (+) 63 Protein_3100 hypothetical protein -
  QNK02_RS16095 (QNK02_16095) - 3100293..3100661 (+) 369 WP_041850584.1 hypothetical protein -
  QNK02_RS16100 (QNK02_16100) pdeH 3100637..3101866 (-) 1230 WP_003243525.1 cyclic di-GMP phosphodiesterase -
  QNK02_RS16105 (QNK02_16105) pncB 3102003..3103475 (-) 1473 WP_003228788.1 nicotinate phosphoribosyltransferase -
  QNK02_RS16110 (QNK02_16110) pncA 3103491..3104042 (-) 552 WP_038828671.1 isochorismatase family cysteine hydrolase -

Sequence


Protein


Download         Length: 286 a.a.        Molecular weight: 32545.49 Da        Isoelectric Point: 4.8309

>NTDB_id=766710 QNK02_RS16080 WP_041850585.1 3098646..3099506(-) (comQ) [Bacillus subtilis strain C1_9]
MKEIVSQKIMNQDLERYLQNFIESKDTFEFADLALHHYLAFNGQDQKAIELLAAGIELLILSFDIYDDLEDQDNGSAVWM
KIDSSIALNAVTALYTLSIQVMCQASHEPEFSQEILNFALQSIQGQHDDIVNAPQTEEACLEMIKNKSGALTALPCVMGV
MLATGKYHPIVASYSYELGIIAQIENDYRGLYYLNNDFIQKKNTLAYLYLNKRFNAASAEILSWYENTELFLSLNSKQIK
EKLTEAGVVQYLLVMKHLSLQKLKKEIARLELQENKIKKLITGIIK

Nucleotide


Download         Length: 861 bp        

>NTDB_id=766710 QNK02_RS16080 WP_041850585.1 3098646..3099506(-) (comQ) [Bacillus subtilis strain C1_9]
ATGAAGGAGATTGTAAGCCAAAAAATAATGAATCAGGACTTGGAACGATATCTTCAGAATTTTATTGAGTCTAAGGATAC
GTTTGAGTTTGCCGATTTGGCTCTTCATCATTATTTAGCTTTTAACGGTCAGGACCAAAAAGCAATCGAATTGCTAGCTG
CCGGAATTGAATTGCTTATACTCTCATTCGATATTTATGATGACTTAGAGGATCAAGATAATGGAAGTGCTGTCTGGATG
AAGATTGACTCGTCAATCGCTTTAAATGCAGTTACAGCTCTTTACACCCTAAGTATACAAGTGATGTGTCAAGCTAGTCA
TGAACCAGAATTTTCACAAGAGATATTGAATTTTGCGTTACAATCAATTCAAGGCCAGCATGATGATATTGTGAATGCGC
CGCAAACTGAAGAAGCCTGTCTTGAAATGATCAAAAATAAATCAGGAGCGCTAACGGCATTGCCCTGTGTAATGGGAGTA
ATGCTGGCAACAGGCAAATACCATCCCATTGTAGCTTCTTATTCTTATGAACTTGGGATTATTGCACAAATCGAAAATGA
TTACCGAGGTTTATATTATCTAAATAACGATTTTATTCAGAAGAAAAACACATTGGCATACTTATACTTAAATAAACGTT
TTAATGCAGCTTCTGCAGAAATCTTGAGTTGGTATGAAAATACTGAGTTGTTCTTATCATTGAATTCCAAACAAATAAAA
GAAAAATTAACTGAGGCAGGCGTAGTGCAATATTTACTTGTAATGAAACACTTGTCATTACAAAAACTAAAGAAAGAAAT
TGCTAGATTAGAATTGCAAGAGAATAAAATAAAAAAATTAATAACAGGAATCATAAAATAA

Domains


Predicted by InterProScan.

(39-197)


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comQ Bacillus subtilis subsp. subtilis str. 168

45.423

99.301

0.451