Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   QNK02_RS15085 Genome accession   NZ_CP126083
Coordinates   2913898..2914608 (-) Length   236 a.a.
NCBI ID   WP_041851103.1    Uniprot ID   -
Organism   Bacillus subtilis strain C1_9     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 2908898..2919608
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QNK02_RS15065 (QNK02_15065) cysK 2908950..2909885 (+) 936 WP_003229237.1 cysteine synthase A -
  QNK02_RS15070 (QNK02_15070) pepV 2909919..2911310 (-) 1392 WP_029318264.1 dipeptidase PepV -
  QNK02_RS15075 (QNK02_15075) pbuO 2911407..2912705 (+) 1299 WP_003229234.1 hypoxanthine/guanine permease PbuO -
  QNK02_RS15080 (QNK02_15080) ythQ 2912744..2913901 (-) 1158 WP_041851102.1 ABC transporter permease -
  QNK02_RS15085 (QNK02_15085) pptA 2913898..2914608 (-) 711 WP_041851103.1 ABC transporter ATP-binding protein Regulator
  QNK02_RS15090 (QNK02_15090) ytzE 2914898..2915119 (+) 222 WP_003152337.1 DeoR family transcriptional regulator -
  QNK02_RS15095 (QNK02_15095) rsuA 2915241..2915960 (-) 720 WP_014480587.1 pseudouridine synthase -
  QNK02_RS15100 (QNK02_15100) murJ 2916029..2917663 (-) 1635 WP_041851104.1 lipid II flippase MurJ -
  QNK02_RS15105 (QNK02_15105) ytfP 2917867..2919129 (+) 1263 WP_072173641.1 NAD(P)/FAD-dependent oxidoreductase -

Sequence

Protein


Download         Length: 236 a.a.        Molecular weight: 26575.63 Da        Isoelectric Point: 5.3508

>NTDB_id=766706 QNK02_RS15085 WP_041851103.1 2913898..2914608(-) (pptA) [Bacillus subtilis strain C1_9]
MTNLLEASIEQAGYTSRNKVLTDVFLEVRKGELVGLIGANGAGKSTAIKAILGLSEDFKGHIAWNDCSFAYIPEHPSFYE
ELTLWEHLDLISTLHGIEEREFAHRAQSLLQTFSLDHVKHELPVTFSKGMQQKLMLIQAFLSKPDMYVIDEPFIGLDPIS
TKRFVDMLKAEKERGAGILMCTHVLDTAEKICDRFYMIEKGSLFLQGTLKDIQDKTGLEGQSLLDCFYKAVQGDRL

Nucleotide


Download         Length: 711 bp        

>NTDB_id=766706 QNK02_RS15085 WP_041851103.1 2913898..2914608(-) (pptA) [Bacillus subtilis strain C1_9]
TTGACAAATTTGCTTGAAGCTTCAATAGAACAGGCCGGGTATACAAGCCGAAATAAAGTGCTCACCGATGTTTTTCTGGA
AGTCAGAAAAGGGGAACTAGTTGGACTGATCGGAGCTAACGGCGCCGGAAAAAGCACCGCAATCAAGGCGATACTCGGCC
TTTCAGAAGATTTTAAAGGGCATATTGCCTGGAACGACTGTTCATTTGCATATATTCCGGAGCATCCGTCCTTTTACGAA
GAACTGACGCTGTGGGAGCATTTGGATCTGATCAGCACACTCCACGGCATTGAAGAGAGAGAATTTGCGCATCGGGCCCA
AAGCCTGCTGCAGACGTTTTCGCTTGATCATGTCAAACATGAGCTACCTGTCACCTTTTCGAAGGGCATGCAGCAAAAAC
TAATGCTTATCCAGGCCTTTCTCTCTAAGCCGGATATGTATGTGATTGATGAACCGTTTATCGGCCTTGATCCGATATCG
ACGAAACGCTTTGTGGACATGCTTAAGGCTGAAAAAGAACGTGGAGCCGGAATTCTTATGTGCACGCATGTACTCGATAC
CGCGGAAAAAATCTGTGACCGGTTTTATATGATTGAGAAAGGTTCATTATTTCTCCAAGGCACGTTAAAAGATATTCAGG
ACAAGACCGGATTAGAGGGGCAGTCATTGCTTGACTGTTTTTATAAGGCAGTTCAAGGTGATCGGCTATGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(21-153)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

44.017

99.153

0.436
  pptA Streptococcus thermophilus LMD-9

44.248

95.763

0.424