Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   R5G_RS08485 Genome accession   NZ_AP025180
Coordinates   1687099..1687614 (-) Length   171 a.a.
NCBI ID   WP_001130211.1    Uniprot ID   A0ABR8T9Y4
Organism   Escherichia coli strain JP538     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1682099..1692614
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R5G_RS08460 (R5G_16460) ygaZ 1682498..1683235 (+) 738 WP_000445651.1 L-valine exporter subunit YgaZ -
  R5G_RS08465 (R5G_16470) ygaH 1683225..1683560 (+) 336 WP_000119763.1 L-valine transporter subunit YgaH -
  R5G_RS08470 (R5G_16480) emrR 1683651..1684181 (+) 531 WP_000378442.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  R5G_RS08475 (R5G_16490) emrA 1684308..1685480 (+) 1173 WP_001326681.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  R5G_RS08480 (R5G_16500) emrB 1685497..1687035 (+) 1539 WP_001295176.1 multidrug efflux MFS transporter permease subunit EmrB -
  R5G_RS08485 (R5G_16510) luxS 1687099..1687614 (-) 516 WP_001130211.1 S-ribosylhomocysteine lyase Regulator
  R5G_RS08490 (R5G_16520) gshA 1687764..1689320 (-) 1557 WP_096216019.1 glutamate--cysteine ligase -
  R5G_RS08495 (R5G_16530) yqaA 1689393..1689821 (-) 429 WP_001287454.1 YqaA family protein -
  R5G_RS08500 (R5G_16540) yqaB 1689818..1690384 (-) 567 WP_000273290.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  R5G_RS08530 (R5G_16550) csrA 1691842..1692027 (-) 186 WP_000906486.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19416.19 Da        Isoelectric Point: 5.0362

>NTDB_id=76664 R5G_RS08485 WP_001130211.1 1687099..1687614(-) (luxS) [Escherichia coli strain JP538]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=76664 R5G_RS08485 WP_001130211.1 1687099..1687614(-) (luxS) [Escherichia coli strain JP538]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTTGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAGCATTCTGGAACGTGACGTACGCATCAACAGCAACGAAGAACTGGCA
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATCTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.099

100

0.731

Multiple sequence alignment