Detailed information    

insolico Bioinformatically predicted

Overview

Name   ylbF   Type   Regulator
Locus tag   QNH30_RS08045 Genome accession   NZ_CP126082
Coordinates   1535136..1535585 (+) Length   149 a.a.
NCBI ID   WP_003221370.1    Uniprot ID   G4NWT8
Organism   Bacillus subtilis strain C1_13     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 1530136..1540585
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QNH30_RS08005 (QNH30_08005) ctaE 1530153..1530776 (+) 624 WP_003232244.1 cytochrome c oxidase subunit III -
  QNH30_RS08010 (QNH30_08010) ctaF 1530779..1531111 (+) 333 WP_003232242.1 cytochrome c oxidase subunit IVB -
  QNH30_RS08015 (QNH30_08015) ctaG 1531138..1532031 (+) 894 WP_015715837.1 cytochrome c oxidase assembly factor CtaG -
  QNH30_RS08020 (QNH30_08020) ylbA 1532063..1532425 (-) 363 WP_003232238.1 YugN family protein -
  QNH30_RS08025 (QNH30_08025) ylbB 1532565..1533011 (+) 447 WP_003221362.1 CBS domain-containing protein -
  QNH30_RS08030 (QNH30_08030) ylbC 1533095..1534135 (+) 1041 WP_041850862.1 CAP domain-containing protein -
  QNH30_RS08035 (QNH30_08035) ylbD 1534367..1534765 (+) 399 WP_003232233.1 YlbD family protein -
  QNH30_RS08040 (QNH30_08040) ylbE 1534781..1535020 (+) 240 WP_003232231.1 YlbE-like family protein -
  QNH30_RS08045 (QNH30_08045) ylbF 1535136..1535585 (+) 450 WP_003221370.1 regulatory iron-sulfur-containing complex subunit RicF Regulator
  QNH30_RS08050 (QNH30_08050) ylbG 1535640..1535912 (+) 273 WP_009967171.1 YlbG family protein -
  QNH30_RS08055 (QNH30_08055) rsmD 1536235..1536789 (+) 555 WP_015483196.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  QNH30_RS08060 (QNH30_08060) coaD 1536794..1537279 (+) 486 WP_003245283.1 pantetheine-phosphate adenylyltransferase -
  QNH30_RS08065 (QNH30_08065) spoVV 1537290..1538516 (-) 1227 WP_014479716.1 dipicolinic acid transporter SpoVV -
  QNH30_RS08070 (QNH30_08070) ylbK 1538697..1539479 (+) 783 WP_021479345.1 patatin family protein -
  QNH30_RS08075 (QNH30_08075) sepM 1539481..1540506 (+) 1026 WP_003245451.1 protease DdcP Regulator

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 16913.96 Da        Isoelectric Point: 4.9284

>NTDB_id=766498 QNH30_RS08045 WP_003221370.1 1535136..1535585(+) (ylbF) [Bacillus subtilis strain C1_13]
MYATMESVRLQSEAQQLAEMILQSETAENYRNCYKRLQEDEEAGRIIRSFIKIKEQYEDVQRFGKYHPDYREISRKMREI
KRELDLNDKVADFKRAENELQSILDEVSVEIGTAVSEHVKVPTGNPYFDGLSSCGGGCGSGGSCGCKVS

Nucleotide


Download         Length: 450 bp        

>NTDB_id=766498 QNH30_RS08045 WP_003221370.1 1535136..1535585(+) (ylbF) [Bacillus subtilis strain C1_13]
ATGTATGCGACGATGGAATCCGTGCGGCTTCAAAGTGAAGCTCAGCAGCTTGCCGAGATGATTCTGCAGTCGGAGACGGC
TGAGAACTACCGCAATTGTTACAAGCGTCTCCAGGAAGATGAAGAGGCAGGTCGGATTATTCGTTCTTTTATCAAAATAA
AAGAGCAGTATGAGGATGTACAGCGTTTTGGCAAATATCATCCTGACTATAGAGAAATATCCCGGAAAATGAGGGAGATC
AAACGTGAGCTGGACCTGAACGACAAGGTGGCTGACTTCAAGAGAGCTGAAAATGAGCTCCAGTCCATTCTTGATGAGGT
CAGCGTTGAGATTGGGACAGCTGTTTCGGAGCATGTGAAAGTTCCGACTGGGAACCCTTATTTTGACGGTTTGTCTTCAT
GCGGAGGCGGCTGCGGTTCAGGCGGAAGCTGCGGATGTAAAGTGTCCTGA

Domains

Predicted by InterProScan.

Control of competence regulator ComK, YlbF/YmcA (Com_YlbF)

(12-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NWT8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ylbF Bacillus subtilis subsp. subtilis str. 168

100

100

1