Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilZ   Type   Machinery gene
Locus tag   LpnA194_RS06725 Genome accession   NZ_CP114578
Coordinates   1477642..1477983 (+) Length   113 a.a.
NCBI ID   WP_027219497.1    Uniprot ID   A0A378K4T3
Organism   Legionella pneumophila strain A194     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1472642..1482983
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LpnA194_RS06700 (LpnA194_01343) acpP 1473470..1473718 (+) 249 WP_003631752.1 acyl carrier protein -
  LpnA194_RS06705 (LpnA194_01344) fabF 1473738..1474976 (+) 1239 WP_011946414.1 beta-ketoacyl-ACP synthase II -
  LpnA194_RS06710 (LpnA194_01345) mltG 1474977..1475975 (+) 999 WP_027219498.1 endolytic transglycosylase MltG -
  LpnA194_RS06715 (LpnA194_01346) tmk 1475975..1476613 (+) 639 WP_011946416.1 dTMP kinase -
  LpnA194_RS06720 (LpnA194_01347) - 1476610..1477515 (+) 906 WP_011946417.1 DNA polymerase III subunit delta' C-terminal domain-containing protein -
  LpnA194_RS06725 (LpnA194_01348) pilZ 1477642..1477983 (+) 342 WP_027219497.1 PilZ domain-containing protein Machinery gene
  LpnA194_RS06730 (LpnA194_01349) - 1478039..1478827 (+) 789 WP_027219496.1 TatD family hydrolase -
  LpnA194_RS06735 (LpnA194_01350) - 1478939..1480039 (+) 1101 WP_027219495.1 anhydro-N-acetylmuramic acid kinase -
  LpnA194_RS06740 (LpnA194_01351) - 1480095..1481387 (+) 1293 WP_027219494.1 MFS transporter -
  LpnA194_RS06745 - 1481460..1481603 (+) 144 WP_013101444.1 hypothetical protein -

Sequence

Protein


Download         Length: 113 a.a.        Molecular weight: 12535.57 Da        Isoelectric Point: 8.2421

>NTDB_id=766498 LpnA194_RS06725 WP_027219497.1 1477642..1477983(+) (pilZ) [Legionella pneumophila strain A194]
MTEKPQLINCSFPNEASLYMAYMPFVKGGGLFIRTQHVYSLGQSLELSIKLLNENEPYLVTGKIVWITPKGAQGNKPPGV
GIQFTGENSRYLCNKIETYLAGMLKSCQVTDTI

Nucleotide


Download         Length: 342 bp        

>NTDB_id=766498 LpnA194_RS06725 WP_027219497.1 1477642..1477983(+) (pilZ) [Legionella pneumophila strain A194]
ATGACCGAAAAACCACAGCTTATAAACTGCTCATTTCCCAATGAAGCATCTTTGTACATGGCTTACATGCCTTTTGTGAA
AGGTGGCGGTCTTTTTATAAGAACTCAACACGTTTATTCTCTAGGGCAGTCGCTTGAATTATCTATTAAATTGCTCAATG
AAAATGAACCATATTTGGTCACTGGTAAAATAGTCTGGATTACTCCTAAAGGTGCACAAGGTAATAAGCCGCCGGGAGTT
GGCATTCAATTTACCGGTGAAAACAGTCGTTATCTATGTAACAAGATAGAAACTTATTTGGCAGGAATGCTAAAATCATG
TCAGGTTACAGATACTATATAG

Domains

Predicted by InterproScan.

PilZ domain (PilZ)

(8-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A378K4T3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilZ Legionella pneumophila str. Paris

99.115

100

0.991
  pilZ Legionella pneumophila strain ERS1305867

99.115

100

0.991