Detailed information    

insolico Bioinformatically predicted

Overview

Name   sepM   Type   Regulator
Locus tag   QNH30_RS08075 Genome accession   NZ_CP126082
Coordinates   1539481..1540506 (+) Length   341 a.a.
NCBI ID   WP_003245451.1    Uniprot ID   O34470
Organism   Bacillus subtilis strain C1_13     
Function   processing of CSP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1534481..1545506
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QNH30_RS08040 (QNH30_08040) ylbE 1534781..1535020 (+) 240 WP_003232231.1 YlbE-like family protein -
  QNH30_RS08045 (QNH30_08045) ylbF 1535136..1535585 (+) 450 WP_003221370.1 regulatory iron-sulfur-containing complex subunit RicF Regulator
  QNH30_RS08050 (QNH30_08050) ylbG 1535640..1535912 (+) 273 WP_009967171.1 YlbG family protein -
  QNH30_RS08055 (QNH30_08055) rsmD 1536235..1536789 (+) 555 WP_015483196.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  QNH30_RS08060 (QNH30_08060) coaD 1536794..1537279 (+) 486 WP_003245283.1 pantetheine-phosphate adenylyltransferase -
  QNH30_RS08065 (QNH30_08065) spoVV 1537290..1538516 (-) 1227 WP_014479716.1 dipicolinic acid transporter SpoVV -
  QNH30_RS08070 (QNH30_08070) ylbK 1538697..1539479 (+) 783 WP_021479345.1 patatin family protein -
  QNH30_RS08075 (QNH30_08075) sepM 1539481..1540506 (+) 1026 WP_003245451.1 protease DdcP Regulator
  QNH30_RS08080 (QNH30_08080) ylbM 1540523..1541770 (-) 1248 WP_041850860.1 nucleotidyltransferase -
  QNH30_RS08085 (QNH30_08085) - 1541767..1541952 (-) 186 WP_003232215.1 hypothetical protein -
  QNH30_RS08090 (QNH30_08090) ylbN 1541980..1542498 (+) 519 WP_014479718.1 DUF177 domain-containing protein -
  QNH30_RS08095 (QNH30_08095) rpmF 1542520..1542699 (+) 180 WP_003154457.1 50S ribosomal protein L32 -
  QNH30_RS08100 (QNH30_08100) gerR 1542845..1543426 (+) 582 WP_015383592.1 sporulation specific transcriptional regulator GerR -
  QNH30_RS08105 (QNH30_08105) ylbP 1543483..1543965 (-) 483 WP_014476736.1 N-acetyltransferase -
  QNH30_RS08110 (QNH30_08110) - 1544125..1545021 (+) 897 WP_003232206.1 2-dehydropantoate 2-reductase -

Sequence

Protein


Download         Length: 341 a.a.        Molecular weight: 37651.23 Da        Isoelectric Point: 6.5347

>NTDB_id=766499 QNH30_RS08075 WP_003245451.1 1539481..1540506(+) (sepM) [Bacillus subtilis strain C1_13]
MLRKKHFSWMLVILILIAVLSFIKLPYYITKPGEATELASLIKVEGGYPEKGSLSLMTVKVGPANPFTYVWAKMHPYYEI
VPDESIKEEGESDKEYMKRQLQMMKSSQENAVIAAYQKAGKKVSYSFNGIYASSVVENMPAKGKIEVGDKIISADGKNYQ
SAEKLIDYISSKKAGDKVTLKIEREEKEKRVTLTLKQFPDEPDRAGIGVSLYTDRNVKVEPDIDFEIENIGGPSAGLMMS
LEIYNQLTKPDETKGYDIAGTGTIDVDGKVGPIGGIDQKVVAADKAGKDIFFAPNQNGASNSDYKNAVKTAKDIDSNMKI
VPVDTMQDAIDYLNKLKAKST

Nucleotide


Download         Length: 1026 bp        

>NTDB_id=766499 QNH30_RS08075 WP_003245451.1 1539481..1540506(+) (sepM) [Bacillus subtilis strain C1_13]
TTGCTACGTAAAAAACATTTTAGCTGGATGCTCGTCATCCTCATACTGATCGCCGTTTTATCATTTATAAAACTTCCATA
CTATATTACAAAACCGGGAGAAGCGACAGAGCTTGCTTCATTGATAAAAGTGGAGGGAGGCTACCCGGAAAAAGGAAGCC
TGTCCTTAATGACTGTTAAAGTGGGACCGGCTAATCCGTTTACATATGTGTGGGCAAAGATGCACCCTTATTATGAAATT
GTTCCTGATGAGAGCATTAAGGAGGAAGGCGAGTCAGATAAGGAGTATATGAAAAGACAGCTCCAAATGATGAAAAGCTC
GCAAGAAAATGCGGTTATAGCCGCCTATCAAAAGGCAGGAAAAAAAGTCAGCTATTCCTTTAACGGCATATACGCAAGCT
CTGTTGTAGAAAACATGCCGGCAAAAGGGAAAATAGAAGTCGGTGATAAAATCATCAGCGCAGACGGCAAAAACTATCAG
TCTGCTGAAAAGCTAATTGATTATATCAGCAGCAAAAAAGCGGGAGATAAAGTCACGTTAAAGATCGAAAGAGAAGAAAA
AGAAAAGCGTGTCACCCTTACGTTAAAACAATTTCCTGATGAGCCGGATCGGGCAGGAATCGGAGTTTCGCTTTATACAG
ACAGAAACGTGAAGGTAGAGCCTGATATTGATTTTGAAATTGAAAATATTGGCGGCCCGTCAGCAGGGTTAATGATGTCC
CTTGAAATCTATAATCAGCTGACAAAACCAGACGAAACAAAAGGCTACGATATTGCGGGAACAGGTACCATTGATGTTGA
TGGGAAAGTAGGCCCGATCGGCGGCATTGATCAAAAAGTCGTCGCCGCAGACAAAGCCGGAAAAGACATTTTCTTCGCGC
CAAATCAAAACGGCGCCAGCAATTCCGATTATAAGAACGCAGTAAAAACAGCAAAAGATATTGATTCAAATATGAAGATT
GTGCCTGTTGATACCATGCAGGATGCGATTGATTATTTGAATAAGCTGAAAGCGAAAAGCACCTGA

Domains

Predicted by InterProScan.

Lon protease (S16) C-terminal proteolytic domain (Lon_C)

(232-331)

Peptidase family M50 (Peptidase_M50)

(59-220)

PDZ domain (PDZ_2)

(128-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 2KJP

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sepM Streptococcus mutans UA159

39.143

100

0.402