Detailed information    

insolico Bioinformatically predicted

Overview

Name   fimT   Type   Machinery gene
Locus tag   LpnA194_RS03165 Genome accession   NZ_CP114578
Coordinates   671586..672293 (-) Length   235 a.a.
NCBI ID   WP_052585483.1    Uniprot ID   -
Organism   Legionella pneumophila strain A194     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 666586..677293
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LpnA194_RS03150 (LpnA194_00629) - 669461..669973 (-) 513 WP_027219362.1 pilus assembly protein -
  LpnA194_RS03155 (LpnA194_00630) - 669970..671037 (-) 1068 WP_011945792.1 PilW family protein -
  LpnA194_RS03160 (LpnA194_00631) pilV 671034..671573 (-) 540 WP_011945793.1 type IV pilus modification protein PilV -
  LpnA194_RS03165 (LpnA194_00632) fimT 671586..672293 (-) 708 WP_052585483.1 GspH/FimT family pseudopilin Machinery gene
  LpnA194_RS03170 (LpnA194_00633) - 672514..673374 (-) 861 WP_044498983.1 polysaccharide deacetylase family protein -
  LpnA194_RS03175 (LpnA194_00634) - 673550..674899 (-) 1350 WP_072368662.1 lpg0634 family Dot/Icm T4SS effector -
  LpnA194_RS03180 (LpnA194_00635) - 675189..676670 (+) 1482 WP_044498984.1 ArnT family glycosyltransferase -

Sequence

Protein


Download         Length: 235 a.a.        Molecular weight: 24868.51 Da        Isoelectric Point: 7.5607

>NTDB_id=766489 LpnA194_RS03165 WP_052585483.1 671586..672293(-) (fimT) [Legionella pneumophila strain A194]
MNKVITESQKFTLRNVANMLFCVDSSVLPAQSNIAQKIQTKGIMYNDLCKDSFDTEVPLNSNPLSIAGFTLVELLVTLSV
FAIILTLIVPSLRTMILNNRLTSNIDSLVSSLNYARGVALDRAVNVAVCPLGSPGSTACGANWSSGWIVVTQPVAGAPTL
LKSHQTSVNDPVITSNVSSVVFDPHGLSTTQSNFTMCDNRGNAFARSAMVLATGFVQSGTTPGQAVWSNGALNCP

Nucleotide


Download         Length: 708 bp        

>NTDB_id=766489 LpnA194_RS03165 WP_052585483.1 671586..672293(-) (fimT) [Legionella pneumophila strain A194]
TTGAACAAAGTGATAACGGAATCACAAAAGTTCACTCTGCGCAACGTAGCTAATATGTTATTTTGCGTTGATAGTAGTGT
ATTGCCCGCACAATCTAATATAGCACAAAAGATACAAACAAAAGGCATAATGTACAATGATCTTTGTAAAGACAGCTTCG
ATACTGAGGTCCCTCTTAATAGCAACCCTCTTTCCATAGCCGGATTCACACTGGTTGAATTATTAGTAACCCTATCTGTT
TTTGCCATCATCTTAACTCTAATCGTCCCTTCATTAAGAACTATGATTTTGAATAACCGTTTGACTTCAAACATTGACTC
ACTGGTAAGCTCATTAAACTATGCGCGTGGAGTGGCACTTGATCGAGCAGTCAATGTGGCAGTATGTCCATTAGGTTCAC
CAGGTTCAACGGCCTGTGGAGCCAACTGGAGCTCAGGATGGATAGTAGTGACCCAACCAGTAGCAGGAGCACCAACGCTT
TTAAAATCGCACCAGACTTCAGTAAATGATCCTGTTATCACTTCGAACGTATCCAGTGTTGTTTTTGACCCACATGGGTT
ATCAACAACCCAAAGTAACTTCACTATGTGTGATAACCGAGGCAATGCGTTTGCCCGCTCGGCAATGGTTTTGGCCACTG
GATTTGTCCAATCAGGAACAACACCCGGCCAGGCAGTCTGGAGTAATGGAGCTCTGAACTGCCCTTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(67-88)

Type II transport protein GspH (GspH)

(106-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  fimT Legionella pneumophila strain Lp02

97.447

100

0.974