Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   LpnH3D14_RS12235 Genome accession   NZ_CP114576
Coordinates   2727561..2728265 (+) Length   234 a.a.
NCBI ID   WP_013101755.1    Uniprot ID   -
Organism   Legionella pneumophila strain H3     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2722561..2733265
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LpnH3D14_RS12210 (LpnH3D14_02456) - 2723794..2724672 (+) 879 WP_269565430.1 lpg2327 family Dot/Icm T4SS effector -
  LpnH3D14_RS12215 (LpnH3D14_02457) - 2724935..2725318 (+) 384 WP_011947172.1 hypothetical protein -
  LpnH3D14_RS12220 (LpnH3D14_02458) - 2725512..2725742 (+) 231 WP_010948035.1 exodeoxyribonuclease VII small subunit -
  LpnH3D14_RS12225 (LpnH3D14_02459) - 2725723..2726619 (+) 897 WP_027219254.1 polyprenyl synthetase family protein -
  LpnH3D14_RS12230 (LpnH3D14_02460) bioC 2726663..2727517 (-) 855 WP_011947175.1 malonyl-ACP O-methyltransferase BioC -
  LpnH3D14_RS12235 (LpnH3D14_02461) comFC 2727561..2728265 (+) 705 WP_013101755.1 ComF family protein Machinery gene
  LpnH3D14_RS12240 (LpnH3D14_02462) - 2728294..2729367 (-) 1074 WP_011947177.1 M50 family metallopeptidase -
  LpnH3D14_RS12245 (LpnH3D14_02463) - 2729424..2729702 (-) 279 WP_010948040.1 hypothetical protein -
  LpnH3D14_RS12250 (LpnH3D14_02464) - 2729741..2729899 (+) 159 WP_229293966.1 hypothetical protein -
  LpnH3D14_RS12255 (LpnH3D14_02465) hemA 2730023..2731297 (+) 1275 WP_013101756.1 glutamyl-tRNA reductase -
  LpnH3D14_RS12260 (LpnH3D14_02466) prfA 2731281..2732369 (+) 1089 WP_011947180.1 peptide chain release factor 1 -
  LpnH3D14_RS12265 (LpnH3D14_02467) prmC 2732362..2733225 (+) 864 WP_011947181.1 peptide chain release factor N(5)-glutamine methyltransferase -

Sequence

Protein


Download         Length: 234 a.a.        Molecular weight: 26845.50 Da        Isoelectric Point: 9.3959

>NTDB_id=766474 LpnH3D14_RS12235 WP_013101755.1 2727561..2728265(+) (comFC) [Legionella pneumophila strain H3]
MLQKFLSITQNLRLPSICTLCNQFHKSQLAVCSNCIEFMKQLGSCCQYCAYPLSDDTYLVCGQCVRKRPSFDRAYIAYRF
EEPLRNLIHQFKYHNGLYLASFLKQLLLDALPKSALKPDCLIPVPMHPKRLKRRGFNQAAVLTRLLARQLKIPYDLYYCQ
KIINTASQANLDGEQRRKNLRHAFYVSPVTYEHVMIVDDLLTTGSTANEMAHTLKNAGVKRVDICCCARAVTKN

Nucleotide


Download         Length: 705 bp        

>NTDB_id=766474 LpnH3D14_RS12235 WP_013101755.1 2727561..2728265(+) (comFC) [Legionella pneumophila strain H3]
GTGCTCCAAAAATTCTTAAGTATAACACAGAACTTACGTTTACCTTCAATATGCACTCTTTGCAACCAGTTTCACAAAAG
CCAACTTGCAGTTTGCTCTAATTGCATAGAGTTTATGAAACAACTTGGATCTTGCTGTCAGTACTGTGCCTACCCCCTTT
CTGATGATACGTATCTGGTTTGTGGTCAATGCGTTAGAAAAAGGCCCTCCTTTGATAGGGCTTATATAGCGTATCGTTTT
GAAGAACCTCTGCGTAATTTAATACATCAGTTTAAATACCATAATGGCCTTTATCTGGCCTCGTTTCTAAAGCAATTACT
TCTTGATGCCTTACCCAAAAGCGCATTGAAACCAGATTGCCTAATTCCCGTTCCCATGCATCCCAAACGATTAAAACGAA
GGGGATTTAACCAGGCTGCTGTATTAACCAGATTATTAGCTCGTCAATTAAAAATCCCTTATGATTTATATTATTGCCAA
AAAATAATCAATACCGCCTCACAAGCCAACCTTGATGGAGAGCAACGAAGGAAAAATTTACGTCATGCTTTTTATGTATC
ACCTGTAACTTATGAACACGTCATGATTGTTGATGACTTATTAACCACAGGCAGCACAGCCAATGAAATGGCACATACAT
TAAAAAATGCCGGAGTTAAGAGAGTAGATATATGTTGTTGTGCGCGGGCTGTAACTAAAAATTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(140-229)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Legionella pneumophila str. Paris

97.009

100

0.97
  comFC Legionella pneumophila strain ERS1305867

96.939

83.761

0.812