Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilZ   Type   Machinery gene
Locus tag   LpnH3D14_RS07125 Genome accession   NZ_CP114576
Coordinates   1544399..1544740 (+) Length   113 a.a.
NCBI ID   WP_011946418.1    Uniprot ID   A0AAP3MBJ2
Organism   Legionella pneumophila strain H3     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1539399..1549740
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LpnH3D14_RS07100 (LpnH3D14_01422) acpP 1540227..1540475 (+) 249 WP_003631752.1 acyl carrier protein -
  LpnH3D14_RS07105 (LpnH3D14_01423) fabF 1540495..1541733 (+) 1239 WP_011946414.1 beta-ketoacyl-ACP synthase II -
  LpnH3D14_RS07110 (LpnH3D14_01424) mltG 1541734..1542732 (+) 999 WP_011946415.1 endolytic transglycosylase MltG -
  LpnH3D14_RS07115 (LpnH3D14_01425) tmk 1542732..1543370 (+) 639 WP_011946416.1 dTMP kinase -
  LpnH3D14_RS07120 (LpnH3D14_01426) - 1543367..1544272 (+) 906 WP_011946417.1 DNA polymerase III subunit delta' C-terminal domain-containing protein -
  LpnH3D14_RS07125 (LpnH3D14_01427) pilZ 1544399..1544740 (+) 342 WP_011946418.1 PilZ domain-containing protein Machinery gene
  LpnH3D14_RS07130 (LpnH3D14_01428) - 1544796..1545584 (+) 789 WP_011946419.1 TatD family hydrolase -
  LpnH3D14_RS07135 (LpnH3D14_01429) - 1545696..1546796 (+) 1101 WP_011946420.1 anhydro-N-acetylmuramic acid kinase -
  LpnH3D14_RS07140 (LpnH3D14_01430) - 1546852..1548144 (+) 1293 WP_041931967.1 MFS transporter -
  LpnH3D14_RS07145 - 1548217..1548360 (+) 144 WP_013101444.1 hypothetical protein -

Sequence

Protein


Download         Length: 113 a.a.        Molecular weight: 12508.54 Da        Isoelectric Point: 8.2421

>NTDB_id=766457 LpnH3D14_RS07125 WP_011946418.1 1544399..1544740(+) (pilZ) [Legionella pneumophila strain H3]
MTEKPQLINCSFPNEASLYMAYMPFVKGGGLFIRTQHVYSLGQSLELSIKLLNESEPYLVTGKIVWITPKGAQGNKPPGV
GIQFTGENSRYLCNKIETYLAGMLKSCQVTDTI

Nucleotide


Download         Length: 342 bp        

>NTDB_id=766457 LpnH3D14_RS07125 WP_011946418.1 1544399..1544740(+) (pilZ) [Legionella pneumophila strain H3]
ATGACCGAAAAACCACAGCTTATAAACTGCTCATTTCCCAATGAAGCATCTTTGTACATGGCTTACATGCCTTTTGTGAA
AGGTGGCGGTCTTTTTATAAGAACTCAACACGTTTATTCTCTAGGGCAGTCGCTTGAATTATCTATTAAATTGCTCAATG
AAAGTGAACCATATTTGGTCACTGGTAAAATAGTCTGGATTACTCCTAAAGGTGCACAAGGTAATAAGCCGCCGGGAGTT
GGCATTCAATTTACCGGTGAAAACAGTCGTTATCTATGTAACAAGATAGAAACTTATTTGGCAGGAATGCTAAAATCATG
TCAGGTTACAGATACTATATAG

Domains

Predicted by InterproScan.

PilZ domain (PilZ)

(8-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilZ Legionella pneumophila str. Paris

98.23

100

0.982
  pilZ Legionella pneumophila strain ERS1305867

98.23

100

0.982