Detailed information    

insolico Bioinformatically predicted

Overview

Name   fimT   Type   Machinery gene
Locus tag   LpnH3D14_RS03600 Genome accession   NZ_CP114576
Coordinates   758585..759292 (-) Length   235 a.a.
NCBI ID   WP_011945794.1    Uniprot ID   A0AAN5T2E4
Organism   Legionella pneumophila strain H3     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 753585..764292
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LpnH3D14_RS03585 (LpnH3D14_00716) - 756460..756972 (-) 513 WP_027219362.1 pilus assembly protein -
  LpnH3D14_RS03590 (LpnH3D14_00717) - 756969..758036 (-) 1068 WP_061820498.1 PilW family protein -
  LpnH3D14_RS03595 (LpnH3D14_00718) pilV 758033..758572 (-) 540 WP_011945793.1 type IV pilus modification protein PilV -
  LpnH3D14_RS03600 (LpnH3D14_00719) fimT 758585..759292 (-) 708 WP_011945794.1 GspH/FimT family pseudopilin Machinery gene
  LpnH3D14_RS03605 (LpnH3D14_00720) - 759515..760375 (-) 861 WP_011945795.1 polysaccharide deacetylase family protein -
  LpnH3D14_RS03610 (LpnH3D14_00721) - 760551..761900 (-) 1350 WP_072368662.1 lpg0634 family Dot/Icm T4SS effector -
  LpnH3D14_RS03615 (LpnH3D14_00722) - 762190..763671 (+) 1482 WP_011945797.1 ArnT family glycosyltransferase -

Sequence

Protein


Download         Length: 235 a.a.        Molecular weight: 24849.51 Da        Isoelectric Point: 7.5609

>NTDB_id=766448 LpnH3D14_RS03600 WP_011945794.1 758585..759292(-) (fimT) [Legionella pneumophila strain H3]
MNKVITESQRFTLRNVANMLLCVDASVLPTQSNIAQKIQTKGIMYNDLCKDSFDTEVPLNSNPLSIAGFTLVELLVTLSV
FAIILTLIVPSLRTMILNSRLTSNIDSLVSSLNYARGVALDRAVNVAVCPLGSPGSTACGANWSSGWIVVTQPVAGAPTL
LKSHQTSVNDPVITSNVSSVVFDPHGLSTTQSNFTMCDNRGNAFARSAMVLATGFVQSGTTPGQAVWSNGALNCP

Nucleotide


Download         Length: 708 bp        

>NTDB_id=766448 LpnH3D14_RS03600 WP_011945794.1 758585..759292(-) (fimT) [Legionella pneumophila strain H3]
TTGAACAAAGTGATAACGGAATCACAAAGGTTCACTCTGCGCAACGTAGCTAATATGTTATTGTGTGTGGATGCTAGTGT
ATTGCCCACACAATCTAATATAGCACAAAAGATACAAACAAAAGGCATAATGTACAATGACCTTTGTAAAGACAGCTTCG
ATACTGAGGTCCCTCTTAACAGCAACCCTCTTTCCATAGCCGGATTCACACTGGTTGAATTATTAGTAACCCTATCTGTT
TTTGCCATTATCTTAACTCTAATCGTCCCTTCATTAAGAACTATGATTTTGAATAGCCGTTTGACTTCAAACATCGACTC
ACTGGTAAGCTCATTAAACTATGCGCGTGGAGTGGCACTTGATCGGGCAGTCAATGTGGCAGTATGTCCATTAGGTTCAC
CAGGTTCAACAGCCTGTGGAGCCAACTGGAGCTCAGGATGGATAGTAGTGACCCAACCAGTAGCAGGAGCACCAACGCTT
TTAAAATCGCACCAGACTTCAGTAAATGATCCTGTTATCACTTCGAACGTATCCAGTGTTGTTTTTGACCCACATGGGTT
ATCAACAACCCAAAGTAACTTCACTATGTGTGATAACCGAGGCAATGCGTTTGCCCGCTCGGCAATGGTTTTGGCCACTG
GATTTGTCCAATCAGGAACAACACCCGGCCAGGCAGTCTGGAGTAATGGAGCTCTGAACTGCCCTTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(67-88)

Type II transport protein GspH (GspH)

(106-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  fimT Legionella pneumophila strain Lp02

96.17

100

0.962