Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   O0957_RS05490 Genome accession   NZ_CP114552
Coordinates   1059283..1061079 (-) Length   598 a.a.
NCBI ID   WP_269563627.1    Uniprot ID   -
Organism   Lactobacillus crispatus strain Lcr-MH175     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1054283..1066079
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  O0957_RS05460 (O0957_05460) - 1056075..1056713 (+) 639 WP_005718164.1 HlyD family efflux transporter periplasmic adaptor subunit -
  O0957_RS05465 (O0957_05465) - 1056921..1057100 (+) 180 WP_005718165.1 hypothetical protein -
  O0957_RS05470 (O0957_05470) - 1057460..1057618 (+) 159 WP_164913815.1 hypothetical protein -
  O0957_RS05475 (O0957_05475) - 1057662..1057802 (+) 141 WP_020993067.1 bacteriocin -
  O0957_RS05480 (O0957_05480) - 1058055..1058852 (+) 798 WP_020993066.1 CPBP family intramembrane glutamic endopeptidase -
  O0957_RS05485 (O0957_05485) - 1058930..1059202 (+) 273 WP_005718171.1 bacteriocin immunity protein -
  O0957_RS05490 (O0957_05490) pepF 1059283..1061079 (-) 1797 WP_269563627.1 oligoendopeptidase F Regulator
  O0957_RS05495 (O0957_05495) - 1061247..1062485 (+) 1239 WP_005718173.1 LCP family protein -
  O0957_RS05500 (O0957_05500) - 1062550..1063239 (+) 690 WP_005718174.1 DUF554 domain-containing protein -
  O0957_RS05505 (O0957_05505) - 1063435..1063605 (-) 171 WP_269563628.1 hypothetical protein -
  O0957_RS05510 (O0957_05510) - 1063619..1063780 (-) 162 WP_005718177.1 hypothetical protein -
  O0957_RS05515 (O0957_05515) - 1063835..1063981 (-) 147 WP_005718178.1 hypothetical protein -
  O0957_RS05520 (O0957_05520) - 1064095..1064646 (-) 552 WP_005722451.1 GNAT family N-acetyltransferase -
  O0957_RS05525 (O0957_05525) - 1064791..1065168 (+) 378 WP_005718180.1 hypothetical protein -

Sequence

Protein


Download         Length: 598 a.a.        Molecular weight: 67998.86 Da        Isoelectric Point: 4.6146

>NTDB_id=766391 O0957_RS05490 WP_269563627.1 1059283..1061079(-) (pepF) [Lactobacillus crispatus strain Lcr-MH175]
MAIPNRNEVPEELKWDLTRILKNDEEWEQAYAAAQEKIDQLGELKGTLAKSGKDLYEGLTKILAVKREVENIYVYATMSS
DVDTANSHYLGYVSRVQSLANQFEAATSFINPEILSIPSDKLAEFKQAEPRLKNYAHYLEMITNKRPHTLPAEQEKLIAD
AGDALGVSENTFNVLTNSDMEYGYVQDDDGNMEQLSDGLYSLLIQSQNRDVRKGAFDTLYATYSQFQNSLASTLSGVVKK
HNYNAKAHKYDSARQAALAENGVPEAVYDTLIQEVDSHLDLLHRYVALRKKILGLKDLQMWDMYVPLTGKPSLSYNFEEA
KEVAKKALKPLGEDYLKHVDYIFNNRVIDPIESKNKVTGAYSGGAYDTDPYELLNWEDNIDSLYTLVHETGHSVHSWYTR
NTQPYVYGDYPIFVAEIASTTNENILTEYFLDHITDPKTRAFILNYYLDSFKGTLFRQTQFAVFEQFLHEADANGEPLTA
DTLDDVYGQINQHYYGDSVEPGGDIALEWSRIPHFYYNFYVYQYATGFAAATALANKVVHGTPAERDAYLGFLKAGSSDY
PTEIMKRAGVDMTKPDYLEDAFKTFEKRLNEFESLIEK

Nucleotide


Download         Length: 1797 bp        

>NTDB_id=766391 O0957_RS05490 WP_269563627.1 1059283..1061079(-) (pepF) [Lactobacillus crispatus strain Lcr-MH175]
ATGGCGATACCAAACAGAAATGAAGTCCCAGAAGAACTTAAGTGGGACTTGACCCGAATTTTAAAAAATGATGAAGAATG
GGAACAGGCCTATGCAGCGGCCCAAGAAAAAATCGACCAACTTGGTGAATTAAAAGGTACATTAGCAAAATCTGGCAAAG
ATTTGTACGAAGGCTTAACTAAGATTCTGGCCGTTAAGCGCGAGGTGGAAAATATTTATGTTTATGCCACCATGTCTAGC
GATGTGGATACTGCCAATTCACATTATTTAGGCTATGTCAGCCGGGTGCAAAGCTTAGCTAACCAATTCGAAGCCGCTAC
TAGTTTTATTAACCCAGAAATCTTGAGCATCCCTAGTGATAAACTAGCTGAATTTAAGCAAGCTGAGCCAAGACTAAAGA
ATTATGCTCACTACTTGGAAATGATTACTAATAAGCGACCTCATACCCTGCCAGCTGAACAAGAAAAGTTAATCGCTGAT
GCTGGAGATGCTTTAGGCGTTTCCGAAAATACTTTTAACGTTTTAACTAACTCTGACATGGAATACGGCTACGTCCAAGA
TGACGATGGCAACATGGAACAACTATCTGACGGTTTGTACTCATTATTAATTCAATCGCAAAACCGTGACGTCAGAAAAG
GTGCCTTCGACACTCTCTATGCTACGTACAGCCAATTCCAGAATTCGCTGGCTTCAACCTTGTCCGGCGTAGTGAAAAAA
CACAACTATAACGCTAAAGCGCACAAATATGACTCTGCCCGTCAAGCAGCACTGGCTGAAAACGGCGTACCTGAAGCAGT
TTACGATACTTTAATTCAAGAAGTTGATTCTCACCTTGACCTGCTCCATCGTTACGTTGCCTTGCGCAAGAAAATTTTAG
GCTTAAAAGATTTGCAAATGTGGGACATGTACGTGCCGCTAACTGGGAAGCCTTCTCTTTCTTATAACTTTGAAGAAGCT
AAGGAAGTTGCTAAAAAGGCATTGAAGCCTTTGGGCGAAGACTACTTGAAGCATGTTGACTATATTTTTAATAATCGTGT
CATCGACCCAATAGAATCTAAAAACAAGGTAACTGGTGCCTACTCCGGTGGTGCTTATGATACCGATCCTTATGAGTTGC
TCAACTGGGAAGATAACATCGATTCACTTTATACTTTAGTCCACGAAACTGGTCACTCCGTTCACTCCTGGTACACTCGC
AATACTCAACCTTACGTTTACGGCGACTATCCAATCTTTGTGGCTGAAATTGCTTCAACTACTAATGAAAATATTTTGAC
CGAATATTTCTTAGACCACATTACCGATCCTAAGACGCGGGCCTTTATCTTAAATTACTACCTTGATTCATTTAAAGGCA
CTTTATTCCGTCAAACTCAATTTGCCGTGTTTGAACAATTCTTGCACGAAGCCGATGCTAATGGAGAACCACTGACCGCT
GACACTTTAGACGACGTTTACGGTCAAATTAATCAGCATTATTACGGCGATAGCGTTGAACCAGGCGGCGATATTGCCCT
TGAATGGTCACGAATTCCACACTTCTACTACAATTTCTATGTGTACCAATATGCGACTGGCTTTGCGGCTGCAACAGCAT
TAGCAAACAAGGTGGTTCATGGAACGCCTGCTGAGAGGGATGCCTACCTTGGCTTTCTTAAAGCTGGTTCAAGTGATTAC
CCAACTGAGATCATGAAGCGTGCTGGCGTAGACATGACTAAGCCTGACTACTTAGAAGATGCCTTCAAGACTTTTGAAAA
ACGGTTGAACGAATTTGAAAGCTTGATTGAGAAATAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(203-583)

Oligopeptidase F (Peptidase_M3_N)

(113-181)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

51.347

99.331

0.51