Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   QFW82_RS21525 Genome accession   NZ_CP126066
Coordinates   5287860..5289284 (+) Length   474 a.a.
NCBI ID   WP_251773694.1    Uniprot ID   -
Organism   Streptomyces sp. NA07423     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5282860..5294284
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QFW82_RS21505 (QFW82_21505) - 5282860..5283705 (-) 846 WP_069873661.1 sugar phosphate isomerase/epimerase -
  QFW82_RS21510 (QFW82_21510) - 5283802..5284731 (-) 930 WP_079258503.1 Ppx/GppA phosphatase family protein -
  QFW82_RS21515 (QFW82_21515) - 5284863..5285825 (+) 963 WP_283885303.1 hypothetical protein -
  QFW82_RS21520 (QFW82_21520) - 5285950..5287659 (-) 1710 WP_251773695.1 sigma-70 family RNA polymerase sigma factor -
  QFW82_RS21525 (QFW82_21525) radA/sms 5287860..5289284 (+) 1425 WP_251773694.1 DNA repair protein RadA Machinery gene
  QFW82_RS21530 (QFW82_21530) disA 5289812..5290870 (+) 1059 WP_069873662.1 DNA integrity scanning diadenylate cyclase DisA Machinery gene
  QFW82_RS21535 (QFW82_21535) - 5291456..5292334 (-) 879 WP_283885306.1 hypothetical protein -
  QFW82_RS21540 (QFW82_21540) - 5292627..5293553 (+) 927 WP_069873517.1 A/G-specific adenine glycosylase -

Sequence

Protein


Download         Length: 474 a.a.        Molecular weight: 49957.89 Da        Isoelectric Point: 7.4052

>NTDB_id=766384 QFW82_RS21525 WP_251773694.1 5287860..5289284(+) (radA/sms) [Streptomyces sp. NA07423]
MAARSSSRSSAKDRPSYRCTECGWTTAKWLGRCPECQAWGTVEEYGTPAVRTTTPGRVTSAALPIGQVDGRQATARTTGV
DELDRVLGGGLVPGAVVLLAGEPGVGKSTLLLDVAAKAASEERRTLYITGEESASQVRLRADRIGALSDHLYLAAETDLS
AVLGHLDSVKPSLLVLDSVQTVASPEIDGAPGGMAQVREVAGALIRASKERGMSTLLVGHVTKDGAIAGPRLLEHLVDVV
LHFEGDRHARLRLVRGVKNRYGATDEVGCFELHDEGITGLADPSGLFLTRRDEPVPGTCLTVTLEGRRPLVAEVQALTVD
SQIPSPRRTTSGLETSRVSMMLAVLEQRGRISALGKRDIYSATVGGVKLSEPAADLAVALALASAASDTPLPKNLVAVGE
VGLAGEVRRVTGVQRRLSEAARLGFTHALVPGDPGRIPDGMRVLEVADIGDALRVLPRRRERGEKARAEAEGNG

Nucleotide


Download         Length: 1425 bp        

>NTDB_id=766384 QFW82_RS21525 WP_251773694.1 5287860..5289284(+) (radA/sms) [Streptomyces sp. NA07423]
ATGGCTGCCCGTAGCTCCTCCCGCTCATCCGCCAAGGACCGCCCCTCCTACCGCTGTACGGAGTGCGGCTGGACCACCGC
CAAGTGGCTCGGCCGCTGCCCGGAATGCCAGGCGTGGGGCACGGTCGAGGAGTACGGCACGCCCGCGGTGCGGACCACCA
CGCCCGGCCGGGTCACCTCCGCCGCCCTGCCCATCGGCCAGGTGGACGGCCGTCAGGCCACCGCGCGGACCACGGGCGTG
GACGAGCTCGACCGGGTGCTCGGCGGCGGGCTGGTCCCCGGCGCCGTCGTGCTGCTCGCCGGGGAGCCCGGGGTCGGCAA
GTCCACCCTGCTGCTGGACGTGGCGGCCAAGGCCGCCTCCGAGGAGCGCCGCACGCTCTACATCACCGGTGAGGAGTCGG
CGAGCCAGGTGCGGCTGCGCGCCGACCGCATCGGCGCGCTCAGCGACCATCTCTACCTGGCCGCCGAGACCGACCTCTCC
GCGGTCCTCGGCCACCTCGACTCGGTCAAGCCCTCGCTGCTGGTCCTGGACTCGGTGCAGACCGTCGCCTCGCCCGAGAT
CGACGGCGCGCCGGGCGGGATGGCGCAGGTGCGCGAGGTGGCCGGGGCGCTCATCCGCGCGTCCAAGGAGCGCGGGATGT
CCACCCTGCTGGTGGGCCATGTCACCAAGGACGGCGCCATCGCGGGGCCCCGGTTGCTGGAGCATCTGGTCGATGTCGTC
CTGCACTTCGAGGGCGACCGGCACGCCCGGCTGCGCCTGGTCCGCGGGGTGAAGAACCGCTACGGGGCGACGGACGAGGT
CGGCTGCTTCGAGCTGCACGACGAGGGCATCACGGGGCTCGCCGACCCCTCCGGGCTGTTCCTCACCCGCCGTGACGAGC
CGGTGCCGGGCACCTGTCTGACGGTCACCCTGGAGGGCCGCCGGCCGCTGGTGGCCGAGGTGCAGGCGCTCACCGTTGAC
TCCCAGATCCCCTCCCCCCGCCGCACCACCTCCGGTCTGGAGACCTCCCGGGTCTCGATGATGCTCGCCGTGCTGGAGCA
GCGCGGCCGGATCAGCGCGCTGGGCAAACGGGACATCTACAGCGCCACGGTGGGCGGGGTGAAGCTGTCCGAGCCCGCCG
CGGACCTCGCGGTGGCGCTCGCGCTGGCCAGCGCCGCCAGTGACACCCCGCTGCCCAAGAACCTGGTGGCGGTGGGCGAG
GTGGGGCTCGCGGGCGAGGTCCGGCGGGTCACCGGCGTACAGCGGCGGCTGTCGGAGGCGGCCCGGCTCGGCTTCACCCA
CGCCCTGGTGCCGGGCGATCCGGGCCGGATACCGGATGGGATGCGGGTGCTGGAGGTCGCGGACATCGGGGACGCGCTGC
GGGTGCTGCCGCGGCGGCGGGAGCGTGGCGAGAAGGCGCGGGCGGAAGCGGAGGGCAATGGCTGA

Domains

Predicted by InterProScan.

Subunit ChlI of Mg-chelatase (ChlI)

(372-431)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(17-44)

AAA domain (AAA_25)

(86-225)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

43.488

95.57

0.416
  radA Streptococcus mitis NCTC 12261

42.731

95.781

0.409
  radA Streptococcus pneumoniae R6

42.794

95.148

0.407
  radA Streptococcus pneumoniae Rx1

42.794

95.148

0.407
  radA Streptococcus pneumoniae TIGR4

42.794

95.148

0.407
  radA Streptococcus pneumoniae D39

42.794

95.148

0.407
  radA Streptococcus mitis SK321

44.028

90.084

0.397