Detailed information    

insolico Bioinformatically predicted

Overview


Name   amiE   Type   Regulator
Locus tag   QFW82_RS18835 Genome accession   NZ_CP126066
Coordinates   4705813..4706937 (+) Length   374 a.a.
NCBI ID   WP_250850954.1    Uniprot ID   -
Organism   Streptomyces sp. NA07423     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context


Location: 4700813..4711937
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QFW82_RS18815 (QFW82_18815) - 4701257..4701979 (-) 723 WP_102937441.1 FadR/GntR family transcriptional regulator -
  QFW82_RS18820 (QFW82_18820) - 4702306..4703976 (+) 1671 WP_107474549.1 ABC transporter substrate-binding protein -
  QFW82_RS18825 (QFW82_18825) - 4703976..4704926 (+) 951 WP_069864660.1 ABC transporter permease -
  QFW82_RS18830 (QFW82_18830) - 4704986..4705816 (+) 831 WP_232638860.1 ABC transporter permease -
  QFW82_RS18835 (QFW82_18835) amiE 4705813..4706937 (+) 1125 WP_250850954.1 ABC transporter ATP-binding protein Regulator
  QFW82_RS18840 (QFW82_18840) - 4706934..4707959 (+) 1026 WP_093701243.1 oligopeptide/dipeptide ABC transporter ATP-binding protein -
  QFW82_RS18845 (QFW82_18845) - 4708124..4709962 (+) 1839 WP_283884758.1 gamma-glutamyltransferase -
  QFW82_RS18850 (QFW82_18850) - 4709985..4710347 (-) 363 WP_069864666.1 DUF1330 domain-containing protein -
  QFW82_RS18855 (QFW82_18855) - 4710453..4710965 (-) 513 WP_079258752.1 hypothetical protein -

Sequence


Protein


Download         Length: 374 a.a.        Molecular weight: 40369.12 Da        Isoelectric Point: 7.2151

>NTDB_id=766382 QFW82_RS18835 WP_250850954.1 4705813..4706937(+) (amiE) [Streptomyces sp. NA07423]
MTTPTTTPALSVRDLSVVFRTPTRVVHAVDGLSYDIAAGEVLAVVGESGCGKSVTSTAVMGLLPPTASVGGSIRLGGREL
VGADERELRDVRGREIAMIFQEPMTSLNPVLTIGRQVGEVLRRHQGIGRREARERAVDLLDLVGIPAPAQRARDYPHQLS
GGMRQRVMIAIAIACDPAVLIADEPTTALDVTVQAGILEVLQSLRERLGTAIVLITHDLGVVADIADRVLVMYAGRGVEQ
APVDELFTTPRHPYTHGLLGAVPVPGRRRAEGERGRLREIPGLVPSLTEQPDRCTFQPRCSYADERCGAQRPALGPLRER
PLRERGERAEQGERGGRGVPHELSAGHVQHEAACWYPVPVHPGQPERPGQEARS

Nucleotide


Download         Length: 1125 bp        

>NTDB_id=766382 QFW82_RS18835 WP_250850954.1 4705813..4706937(+) (amiE) [Streptomyces sp. NA07423]
ATGACCACGCCCACGACGACTCCTGCCCTAAGCGTGCGGGACCTGTCCGTGGTCTTCCGTACCCCGACCCGTGTCGTGCA
CGCGGTGGACGGGCTGTCGTACGACATCGCCGCCGGTGAAGTGCTGGCCGTGGTCGGCGAGTCCGGCTGCGGCAAGTCCG
TGACCTCCACCGCCGTGATGGGGCTGCTGCCGCCCACCGCGAGCGTCGGCGGCTCCATCCGGCTGGGCGGACGGGAACTG
GTGGGGGCGGACGAGCGGGAGCTGCGGGACGTCCGCGGCCGGGAGATCGCGATGATCTTCCAGGAGCCGATGACCTCGCT
GAACCCCGTGCTCACCATCGGCCGCCAGGTCGGCGAGGTCCTCCGGCGCCACCAGGGGATCGGCCGCCGCGAGGCGCGCG
AACGGGCCGTGGACCTGCTCGACCTCGTCGGCATCCCCGCCCCCGCACAGCGGGCCCGCGACTATCCGCACCAGCTCAGC
GGCGGTATGCGGCAGCGGGTGATGATCGCCATCGCGATCGCCTGCGACCCGGCCGTGCTCATCGCCGACGAGCCCACCAC
CGCGCTGGACGTCACCGTGCAGGCGGGCATCCTGGAGGTGCTCCAGTCCCTGCGGGAGCGGCTCGGCACCGCCATCGTGC
TGATCACCCACGATCTGGGCGTGGTCGCCGACATCGCCGACCGGGTGCTGGTGATGTACGCGGGGCGGGGCGTCGAACAG
GCCCCGGTGGACGAGTTGTTCACCACGCCCCGCCATCCGTACACCCACGGGCTGCTCGGCGCGGTGCCGGTGCCCGGCCG
GCGGCGGGCGGAGGGCGAGCGGGGGCGGCTCCGGGAGATCCCCGGACTGGTGCCGAGCCTCACCGAACAGCCCGACCGCT
GCACCTTCCAGCCCCGCTGCTCCTACGCCGACGAACGGTGCGGCGCGCAGCGGCCCGCGCTGGGGCCGTTGCGGGAACGG
CCGTTGCGGGAGCGGGGCGAACGTGCCGAGCAGGGTGAACGTGGCGGGCGAGGCGTACCACATGAGCTGAGTGCAGGGCA
TGTACAGCACGAGGCCGCATGCTGGTATCCGGTGCCGGTCCACCCCGGACAACCCGAACGTCCCGGACAGGAGGCCCGCT
CATGA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus thermophilus LMG 18311

49.175

81.016

0.398

  amiE Streptococcus thermophilus LMD-9

49.175

81.016

0.398

  amiE Streptococcus salivarius strain HSISS4

48.845

81.016

0.396

  oppD Streptococcus mutans UA159

47.279

78.61

0.372