Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   CC22TP_RS10765 Genome accession   NZ_AP025177
Coordinates   2171347..2171817 (+) Length   156 a.a.
NCBI ID   WP_000164420.1    Uniprot ID   -
Organism   Staphylococcus aureus strain TPS6281     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2166347..2176817
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CC22TP_RS10745 (TPS6281TP_20180) coaW 2166656..2167459 (+) 804 WP_000862728.1 type II pantothenate kinase -
  CC22TP_RS10750 (TPS6281TP_20190) - 2167589..2168260 (-) 672 WP_000120549.1 DUF2750 domain-containing protein -
  CC22TP_RS10755 (TPS6281TP_20200) ldmS 2168659..2169852 (-) 1194 WP_000183712.1 L-aspartate--L-methionine ligase LdmS -
  CC22TP_RS10760 (TPS6281TP_20210) - 2169852..2171036 (-) 1185 WP_001291497.1 M20 family metallopeptidase -
  CC22TP_RS10765 (TPS6281TP_20220) luxS 2171347..2171817 (+) 471 WP_000164420.1 S-ribosylhomocysteine lyase Regulator
  CC22TP_RS10770 (TPS6281TP_20230) - 2171969..2172319 (-) 351 WP_001024035.1 membrane protein -
  CC22TP_RS10775 (TPS6281TP_20240) - 2172333..2173634 (-) 1302 WP_001242303.1 pyrimidine-nucleoside phosphorylase -
  CC22TP_RS10780 (TPS6281TP_20250) deoC 2173914..2174576 (-) 663 WP_001083341.1 deoxyribose-phosphate aldolase -
  CC22TP_RS10785 (TPS6281TP_20260) deoD 2174891..2175601 (+) 711 WP_000160303.1 purine-nucleoside phosphorylase -
  CC22TP_RS10790 (TPS6281TP_20270) - 2175723..2176166 (-) 444 WP_000070865.1 Dps family protein -
  CC22TP_RS10795 (TPS6281TP_20280) - 2176366..2176779 (-) 414 WP_001123311.1 thiol-disulfide oxidoreductase DCC family protein -

Sequence

Protein


Download         Length: 156 a.a.        Molecular weight: 17527.83 Da        Isoelectric Point: 5.7531

>NTDB_id=76637 CC22TP_RS10765 WP_000164420.1 2171347..2171817(+) (luxS) [Staphylococcus aureus strain TPS6281]
MTKMNVESFNLDHTKVVAPFIRLAGTMEGLNGDVIHKYDIRFKQPNKEHMDMPGLHSLEHLMAENIRNHSDKVVDLSPMG
CQTGFYVSFINHDNYDDVLNIVEATLNDVLKATEVPACNEVQCGWAASHSLEGAKTIAQAFLDKRNEWHDVFGTGK

Nucleotide


Download         Length: 471 bp        

>NTDB_id=76637 CC22TP_RS10765 WP_000164420.1 2171347..2171817(+) (luxS) [Staphylococcus aureus strain TPS6281]
ATGACAAAAATGAATGTTGAAAGTTTCAATTTAGATCATACTAAAGTGGTTGCCCCATTTATTAGATTAGCGGGAACGAT
GGAAGGATTAAACGGAGATGTCATTCACAAATACGACATTCGTTTCAAACAACCAAACAAAGAACATATGGATATGCCCG
GACTACATTCATTAGAACATTTAATGGCTGAAAATATTAGAAATCATAGTGACAAAGTTGTTGATTTAAGTCCTATGGGT
TGCCAAACTGGTTTCTATGTATCATTTATTAATCATGATAATTATGATGATGTATTAAATATTGTTGAAGCAACTTTAAA
TGATGTGCTAAAAGCTACTGAAGTGCCTGCTTGTAATGAAGTACAATGTGGCTGGGCAGCAAGTCATTCATTAGAAGGTG
CTAAAACTATCGCTCAAGCATTTCTAGACAAACGAAACGAATGGCATGATGTTTTCGGTACAGGAAAATAA

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(5-148)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

45.39

90.385

0.41

Multiple sequence alignment