Detailed information    

insolico Bioinformatically predicted

Overview

Name   recQ   Type   Machinery gene
Locus tag   QFW82_RS08295 Genome accession   NZ_CP126066
Coordinates   2212209..2214080 (+) Length   623 a.a.
NCBI ID   WP_069860353.1    Uniprot ID   A0A291T258
Organism   Streptomyces sp. NA07423     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2207209..2219080
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QFW82_RS08275 (QFW82_08275) - 2207832..2208821 (+) 990 WP_069860357.1 zinc-dependent alcohol dehydrogenase family protein -
  QFW82_RS08280 (QFW82_08280) - 2208899..2210269 (+) 1371 WP_283882602.1 FAD-dependent monooxygenase -
  QFW82_RS08285 (QFW82_08285) - 2210637..2211434 (+) 798 WP_283882603.1 DeoR/GlpR family DNA-binding transcription regulator -
  QFW82_RS08290 (QFW82_08290) - 2211493..2212053 (-) 561 WP_069860354.1 snapalysin family zinc-dependent metalloprotease -
  QFW82_RS08295 (QFW82_08295) recQ 2212209..2214080 (+) 1872 WP_069860353.1 DNA helicase RecQ Machinery gene
  QFW82_RS08300 (QFW82_08300) - 2214196..2216373 (-) 2178 WP_069860352.1 family 16 glycoside hydrolase -
  QFW82_RS08305 (QFW82_08305) - 2216412..2218901 (-) 2490 WP_099017217.1 ThuA domain-containing protein -

Sequence

Protein


Download         Length: 623 a.a.        Molecular weight: 67986.58 Da        Isoelectric Point: 6.1069

>NTDB_id=766355 QFW82_RS08295 WP_069860353.1 2212209..2214080(+) (recQ) [Streptomyces sp. NA07423]
MALPDTGPDMSDAPGPETSAALDVLHRVFGYDAFRGGQQEIIDHVVAGGDALVLMPTGGGKSLCYQIPALVRKGVGVVIS
PLIALMQDQVDALRNLGVRAGFLNSTQDLDERRLVEAEFLAGELDLLYLAPERLRVESTLRLLDRGTVSLFAIDEAHCVA
QWGHDFRPDYLALSELHERWPTVPRIALTATATEATHSEIASRLKLQDALHFVASFDRPNIQYRIAPKNEPKKQLLELLR
TEHPGDAGIVYCLSRASVEKTAEFLVAQGIDAVPYHAGLDARIRAEHQARFLREDGLVVVATIAFGMGIDKPDVRFVAHL
DLPKSVEGYYQETGRAGRDGLPSTAWLAYGLQDVVQQRKMIDTSEGDDTHRRRLGAHLDAMLALCETVECRRVGLLAYFG
QESTPCGNCDTCLTPPEVRDGTVPAQKLLSTVVRLKRERNQKFGAGQIIDILLGKKTAKVIQFDHDALSVFGIGTELREA
EWRGAVRQLLAQGLLGVEGDYGTLVLTDASAEVLNGRHEVRLRREPEKVSRAAKGKTGTSGKAKKAPVDLAEEAVPVFER
LRAWRAATAKEQGVPAYVVFHDATLREIATSLPATLDELGTVNGVGENKLVKYGQGILDTLAS

Nucleotide


Download         Length: 1872 bp        

>NTDB_id=766355 QFW82_RS08295 WP_069860353.1 2212209..2214080(+) (recQ) [Streptomyces sp. NA07423]
ATGGCTCTCCCCGACACCGGCCCCGACATGAGCGACGCACCAGGCCCCGAGACGAGCGCCGCGCTCGACGTCCTGCACCG
CGTCTTCGGTTACGACGCGTTCCGGGGAGGGCAGCAGGAGATCATCGACCATGTGGTGGCCGGTGGTGACGCGCTCGTCC
TGATGCCGACCGGCGGTGGCAAATCGCTGTGCTACCAGATCCCGGCGCTGGTCCGGAAGGGCGTCGGCGTCGTCATCTCC
CCGCTGATCGCGCTGATGCAGGACCAGGTCGACGCCCTGCGGAACCTCGGGGTCCGGGCCGGGTTCCTCAACTCCACCCA
GGACCTGGACGAGCGCCGGCTGGTCGAGGCCGAGTTCCTCGCGGGCGAGCTGGATCTGCTCTATCTCGCACCGGAGCGGC
TGCGGGTCGAGTCCACGCTGCGGCTGCTGGACCGGGGCACGGTCTCGCTGTTCGCCATCGACGAGGCGCACTGTGTGGCC
CAGTGGGGGCACGACTTCCGGCCCGACTATCTGGCCCTGTCCGAGCTGCATGAGCGCTGGCCCACCGTGCCCCGGATCGC
GCTGACCGCCACCGCCACCGAGGCCACCCACTCCGAGATCGCGTCCCGGCTGAAGCTCCAGGACGCGCTGCACTTCGTGG
CCAGCTTCGACCGCCCGAACATCCAGTACCGGATCGCCCCCAAGAACGAGCCCAAGAAGCAGCTGCTGGAGCTGTTGCGC
ACCGAGCACCCGGGCGACGCGGGGATCGTCTACTGCCTGTCCCGAGCCTCGGTGGAGAAGACGGCCGAGTTCCTGGTCGC
CCAGGGCATCGACGCGGTGCCGTACCACGCGGGGCTGGACGCGCGGATCCGCGCCGAGCACCAGGCGCGCTTCCTGCGCG
AGGACGGTCTGGTCGTGGTGGCCACGATCGCGTTCGGCATGGGCATCGACAAGCCCGATGTGCGGTTCGTGGCCCATCTG
GACCTGCCCAAGTCCGTCGAGGGCTACTACCAGGAGACCGGCCGCGCCGGGCGGGACGGGCTGCCCTCCACCGCATGGCT
GGCGTACGGGCTCCAGGACGTCGTCCAGCAGCGGAAGATGATCGACACCTCCGAGGGCGACGACACCCACCGGCGGCGCC
TGGGCGCCCATCTCGACGCGATGCTGGCGCTGTGCGAGACGGTGGAGTGCCGCCGGGTGGGGCTGCTGGCCTACTTCGGC
CAGGAGTCCACCCCCTGCGGCAACTGCGACACCTGCCTCACACCGCCGGAAGTCCGGGACGGCACCGTCCCCGCGCAGAA
GCTGCTGTCCACGGTGGTGCGGCTCAAGCGGGAGCGCAACCAGAAGTTCGGCGCCGGCCAGATCATCGACATCCTGCTCG
GCAAGAAGACCGCCAAGGTCATCCAGTTCGACCATGACGCCCTGTCGGTGTTCGGCATCGGCACGGAGCTGCGCGAGGCC
GAATGGCGCGGCGCGGTACGGCAGTTGCTGGCCCAGGGGCTGCTCGGGGTCGAGGGGGACTACGGCACGCTGGTGCTCAC
CGACGCGAGCGCGGAGGTGCTGAACGGGCGGCACGAGGTCAGGCTGCGGCGCGAACCGGAGAAGGTCTCGCGGGCCGCGA
AGGGGAAGACGGGCACCTCGGGGAAGGCCAAGAAGGCCCCGGTGGATCTGGCGGAGGAGGCCGTGCCGGTCTTCGAGCGG
CTGCGCGCCTGGCGGGCGGCGACCGCGAAGGAGCAGGGTGTCCCCGCGTATGTGGTCTTCCACGACGCCACCCTGCGCGA
GATCGCGACGAGTCTCCCGGCCACGCTCGACGAGCTCGGCACGGTGAACGGGGTCGGCGAGAACAAGCTGGTGAAGTACG
GACAGGGGATTCTGGACACCCTGGCGTCCTGA

Domains

Predicted by InterProScan.

Helicase conserved C-terminal domain (Helicase_C)

(233-339)

RQC domain (RQC)

(415-528)

RecQ zinc-binding (RecQ_Zn_bind)

(352-413)

DEAD/DEAH box helicase (DEAD)

(38-194)

HRDC domain (HRDC)

(557-620)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A291T258

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recQ Bacillus subtilis subsp. subtilis str. 168

38.689

97.913

0.379