Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   QIH95_RS22195 Genome accession   NZ_CP126013
Coordinates   4800590..4801576 (+) Length   328 a.a.
NCBI ID   WP_038955510.1    Uniprot ID   A0ABV2RZA5
Organism   Bradyrhizobium japonicum strain S11L-Bj     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 4795590..4806576
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QIH95_RS22180 (QIH95_22165) - 4795596..4797629 (+) 2034 WP_038955508.1 NAD(+) synthase -
  QIH95_RS22185 (QIH95_22170) - 4798106..4798921 (+) 816 WP_248888257.1 sugar phosphate isomerase/epimerase -
  QIH95_RS22190 (QIH95_22175) - 4798952..4800589 (+) 1638 WP_038932918.1 ABC transporter substrate-binding protein -
  QIH95_RS22195 (QIH95_22180) amiE 4800590..4801576 (+) 987 WP_038955510.1 ABC transporter ATP-binding protein Regulator
  QIH95_RS22200 (QIH95_22185) - 4801573..4802565 (+) 993 WP_038955511.1 ABC transporter ATP-binding protein -
  QIH95_RS22205 (QIH95_22190) - 4802565..4803494 (+) 930 WP_014495224.1 ABC transporter permease -
  QIH95_RS22210 (QIH95_22195) - 4803491..4804411 (+) 921 WP_038955513.1 ABC transporter permease -
  QIH95_RS22215 (QIH95_22200) - 4804459..4805835 (-) 1377 WP_049812801.1 SagB family peptide dehydrogenase -

Sequence

Protein


Download         Length: 328 a.a.        Molecular weight: 34442.08 Da        Isoelectric Point: 6.7448

>NTDB_id=766314 QIH95_RS22195 WP_038955510.1 4800590..4801576(+) (amiE) [Bradyrhizobium japonicum strain S11L-Bj]
MATPLVSIQGLNVAFNGVSVLRGVDLALQKGEAVGLVGESGSGKSVTWLAALGLLPRHAKVSGSVRLDGREILGAAASEL
DRVRGGRVAMIFQDPASALNPVLTIRKQLYEALALHRDLSGEAVKAEARRLLDLVGIPDAARRLEAYPHEFSGGQVQRIM
IAMALAGNPDLLIADEPTTALDATIQAQILELLSTIRREMSMAMVLISHDLGVVAENCDRVAVMYAGRIVEQAPANQLFA
DPVHPYAQGLIGALPPLDGPRRRLTAIPGTVPDPAHMPIGCAFAPRCALAAEPCGLAVPSLAPIANDRVVACIRAEASRR
ALLGIAAE

Nucleotide


Download         Length: 987 bp        

>NTDB_id=766314 QIH95_RS22195 WP_038955510.1 4800590..4801576(+) (amiE) [Bradyrhizobium japonicum strain S11L-Bj]
GTGGCGACGCCGCTGGTCAGCATCCAGGGCCTCAACGTCGCCTTCAACGGCGTATCGGTCTTGCGCGGCGTCGATCTCGC
TTTGCAGAAGGGCGAGGCCGTCGGCCTCGTTGGCGAGTCCGGCTCCGGCAAGTCAGTGACGTGGCTTGCTGCGCTCGGCC
TCTTGCCGCGGCATGCAAAAGTCTCGGGCTCCGTGCGGCTCGACGGACGCGAAATCCTCGGCGCAGCCGCGAGTGAGCTT
GACCGGGTGCGGGGCGGGCGGGTCGCCATGATTTTTCAGGACCCCGCAAGCGCGCTCAATCCGGTGCTCACCATTCGCAA
GCAGCTGTACGAGGCTTTGGCGCTGCATCGCGATCTCTCGGGCGAGGCGGTGAAGGCCGAAGCGCGGCGGCTGCTCGATC
TCGTCGGCATTCCCGATGCGGCGCGGCGGCTCGAAGCCTATCCGCACGAATTCTCCGGCGGCCAGGTCCAGCGCATCATG
ATCGCGATGGCGCTGGCCGGAAATCCCGATCTGCTTATCGCGGACGAGCCGACCACGGCGCTCGACGCCACCATCCAGGC
GCAGATCCTGGAGCTGCTCTCGACCATCCGCCGCGAGATGAGCATGGCGATGGTGCTGATCAGCCATGATCTCGGCGTCG
TCGCGGAGAACTGCGACCGCGTCGCCGTGATGTATGCCGGCCGCATCGTCGAGCAGGCGCCCGCCAACCAGCTCTTTGCC
GATCCGGTGCATCCCTACGCGCAGGGCCTGATCGGCGCACTGCCGCCGCTCGACGGACCGCGTCGGCGTCTCACGGCCAT
TCCGGGGACCGTTCCCGATCCCGCGCACATGCCAATCGGCTGTGCCTTCGCGCCGCGCTGCGCGCTGGCGGCCGAGCCGT
GCGGACTTGCCGTGCCGAGCCTGGCGCCGATCGCGAACGATCGCGTGGTTGCCTGTATCCGTGCCGAGGCCTCGCGCCGC
GCGCTGCTCGGGATCGCCGCCGAATGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(21-178)

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(230-294)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus thermophilus LMG 18311

45.455

83.841

0.381
  amiE Streptococcus thermophilus LMD-9

45.455

83.841

0.381
  amiE Streptococcus salivarius strain HSISS4

45.126

84.451

0.381
  oppD Streptococcus mutans UA159

42.414

88.415

0.375