Detailed information    

insolico Bioinformatically predicted

Overview

Name   recQ   Type   Machinery gene
Locus tag   QIH95_RS03115 Genome accession   NZ_CP126013
Coordinates   660777..662642 (+) Length   621 a.a.
NCBI ID   WP_038959744.1    Uniprot ID   A0ABV2SCP1
Organism   Bradyrhizobium japonicum strain S11L-Bj     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 655777..667642
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QIH95_RS03100 (QIH95_03100) - 657343..658644 (+) 1302 WP_038959741.1 O-acetylhomoserine aminocarboxypropyltransferase/cysteine synthase family protein -
  QIH95_RS03105 (QIH95_03105) - 658657..659658 (+) 1002 WP_038959742.1 homoserine O-succinyltransferase -
  QIH95_RS03110 (QIH95_03110) - 659762..660505 (+) 744 WP_038959743.1 polysaccharide deacetylase family protein -
  QIH95_RS03115 (QIH95_03115) recQ 660777..662642 (+) 1866 WP_038959744.1 DNA helicase RecQ Machinery gene
  QIH95_RS03120 (QIH95_03120) - 662830..663843 (-) 1014 WP_014490457.1 1-aminocyclopropane-1-carboxylate deaminase -
  QIH95_RS03125 (QIH95_03125) - 664007..664471 (+) 465 WP_038959792.1 Lrp/AsnC family transcriptional regulator -
  QIH95_RS03130 (QIH95_03130) - 664578..665741 (+) 1164 WP_038959791.1 PLP-dependent cysteine synthase family protein -
  QIH95_RS03135 (QIH95_03135) - 665851..666411 (+) 561 WP_038959790.1 carboxymuconolactone decarboxylase family protein -

Sequence

Protein


Download         Length: 621 a.a.        Molecular weight: 68119.84 Da        Isoelectric Point: 7.6111

>NTDB_id=766282 QIH95_RS03115 WP_038959744.1 660777..662642(+) (recQ) [Bradyrhizobium japonicum strain S11L-Bj]
MSAPSTAPLPAPANGRDALSVLHSVFGLPGFRGAQGEIIRHVSDGGNCLVLMPTGGGKSLCYQLPSLLREGCGIVVSPLI
ALMRDQVAGLLEAGVNAAALNSSLTLQEASDIERRLIAGDLDLLYVAPERLVTPRCLSLLAQAKVALFAIDEAHCVSQWG
HDFRPEYVGLSIIAERFPNVPRIALTATADELTRKEIVERLRLADSPQFVSSFDRPNIRYEIVDKRNAVSQLKEFIRERH
TGDAGVVYCLSRNRVEEVAAALDDAGIAALPYHAGLDSSIRSRNQDRFLNEDGIVIVATIAFGMGIDKPDVRFVAHLDLP
KSIEAYYQETGRAGRDGKPSAAWMAYGLSDIVQQRRMIDESSGSDDFKRVSIGKLDALVGLAETAQCRRKRLLAYFGEAE
TAHNCGNCDNCLTPPKMRDGKVLAQKLLSCAYRTGQRFGAMQLIDVLIGRLTEKVTQFGHDKLSVFGIGRELNEKQWRTV
LRQLVAMGHLYSDSEAFGALKLTESARGVLRGETEVWLREEAPGTRVRASRTKSRRGDLAPAANAPQGDVDPELRARLRS
WRSDIARERGVPAYVVLHDATIDGIVRAWPTTLDELRNVPGIGDKKLEHYGDELLQIVKTR

Nucleotide


Download         Length: 1866 bp        

>NTDB_id=766282 QIH95_RS03115 WP_038959744.1 660777..662642(+) (recQ) [Bradyrhizobium japonicum strain S11L-Bj]
ATGTCCGCTCCCTCCACCGCCCCGCTGCCTGCGCCGGCCAACGGCCGCGACGCGCTGTCGGTGCTGCATTCGGTGTTCGG
CCTGCCGGGGTTCCGCGGCGCGCAGGGCGAGATCATCCGGCACGTCTCGGATGGCGGCAATTGCCTGGTCTTGATGCCGA
CCGGCGGCGGCAAGTCGCTGTGCTATCAATTGCCGTCACTGCTGCGCGAAGGCTGCGGTATCGTGGTGTCGCCGCTGATC
GCGCTGATGCGCGACCAGGTCGCCGGCCTGCTCGAGGCCGGGGTCAATGCCGCCGCGCTGAACTCGTCGCTGACGTTGCA
GGAGGCTTCCGACATCGAGCGCCGCCTGATCGCGGGCGATCTCGACCTGCTCTATGTCGCGCCGGAACGCCTGGTGACGC
CGCGCTGCCTGTCGCTGCTGGCGCAGGCGAAGGTCGCGCTGTTCGCGATCGACGAGGCGCATTGCGTCTCGCAATGGGGC
CATGACTTCCGCCCCGAATATGTCGGCCTCTCCATCATCGCCGAACGTTTTCCGAACGTTCCGCGCATCGCGCTGACCGC
GACCGCCGACGAGCTGACGCGCAAGGAGATCGTCGAGCGCCTCCGGCTCGCCGACAGCCCGCAATTCGTCTCCAGCTTCG
ATCGCCCGAATATCCGCTACGAGATCGTCGACAAGCGCAATGCCGTGTCGCAGCTGAAAGAATTCATCCGGGAGCGGCAT
ACGGGCGACGCCGGCGTGGTCTATTGCCTGTCGCGCAATCGCGTCGAGGAGGTTGCCGCCGCGCTCGACGACGCCGGCAT
TGCGGCGCTGCCCTATCACGCCGGGCTCGACAGCAGCATACGCTCGCGCAACCAGGACCGGTTCCTCAACGAGGACGGCA
TCGTCATCGTCGCGACCATCGCCTTCGGCATGGGCATCGACAAGCCCGACGTCCGCTTCGTCGCCCATCTCGATCTGCCC
AAGAGCATCGAGGCCTATTATCAGGAGACGGGGCGCGCTGGCCGCGACGGCAAGCCGTCGGCGGCCTGGATGGCCTATGG
TCTTTCCGACATCGTGCAGCAGCGCCGCATGATCGACGAGTCCAGCGGTTCTGACGATTTCAAGCGGGTGTCGATCGGCA
AGCTCGACGCACTGGTCGGCCTCGCCGAGACCGCGCAGTGCCGGCGCAAGCGGCTGCTCGCCTATTTCGGCGAGGCGGAG
ACGGCGCACAATTGCGGCAATTGCGACAACTGCCTGACGCCGCCCAAGATGCGCGACGGCAAGGTGCTGGCGCAGAAGCT
GCTGTCCTGCGCCTATCGCACCGGGCAGCGTTTCGGTGCGATGCAGCTGATCGACGTGCTGATTGGTCGCCTTACCGAGA
AGGTGACGCAGTTCGGCCACGACAAATTGTCCGTGTTCGGCATCGGGCGCGAGCTGAACGAGAAGCAGTGGCGCACGGTG
TTGCGGCAGCTGGTGGCGATGGGGCATTTGTACAGCGACAGCGAGGCGTTTGGCGCCCTGAAGCTGACGGAGAGCGCGCG
CGGCGTGCTACGCGGCGAGACAGAGGTGTGGCTGCGCGAGGAAGCGCCGGGCACGCGTGTTCGCGCGAGCCGGACGAAAT
CCCGCCGTGGTGACCTCGCGCCTGCGGCCAACGCGCCGCAGGGCGATGTCGATCCCGAATTGCGGGCGCGGCTGAGGTCC
TGGCGTTCGGACATCGCGCGCGAACGCGGCGTGCCGGCCTATGTCGTGCTGCACGATGCCACCATCGACGGCATCGTCCG
GGCCTGGCCGACGACGCTGGACGAACTCCGCAACGTGCCCGGCATCGGCGACAAGAAGCTCGAGCATTACGGCGACGAGC
TGCTCCAGATCGTCAAGACGCGGTAG

Domains

Predicted by InterProScan.

DEAD/DEAH box helicase (DEAD)

(34-190)

Helicase conserved C-terminal domain (Helicase_C)

(229-336)

HRDC domain (HRDC)

(553-618)

RQC domain (RQC)

(414-522)

RecQ zinc-binding (RecQ_Zn_bind)

(349-412)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recQ Bacillus subtilis subsp. subtilis str. 168

37.686

97.424

0.367