Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   O2U04_RS00890 Genome accession   NZ_CP114515
Coordinates   183037..184854 (+) Length   605 a.a.
NCBI ID   WP_283473581.1    Uniprot ID   -
Organism   Ligilactobacillus salivarius strain S40     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 178037..189854
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  O2U04_RS00875 (O2U04_00875) - 179479..181125 (+) 1647 WP_283473587.1 phosphoenolpyruvate carboxykinase (ATP) -
  O2U04_RS00880 (O2U04_00880) - 181229..181990 (+) 762 WP_283473585.1 adaptor protein MecA -
  O2U04_RS00885 (O2U04_00885) - 182040..182939 (+) 900 WP_283473583.1 competence protein CoiA family protein -
  O2U04_RS00890 (O2U04_00890) pepF 183037..184854 (+) 1818 WP_283473581.1 oligoendopeptidase F Regulator
  O2U04_RS00895 (O2U04_00895) - 184943..185539 (-) 597 WP_283474655.1 ClpXP adapter SpxH family protein -
  O2U04_RS00900 (O2U04_00900) - 185716..186570 (+) 855 WP_283473579.1 phosphate ABC transporter substrate-binding protein -
  O2U04_RS00905 (O2U04_00905) pstC 186581..187498 (+) 918 WP_283473577.1 phosphate ABC transporter permease subunit PstC -
  O2U04_RS00910 (O2U04_00910) pstA 187498..188388 (+) 891 WP_003701551.1 phosphate ABC transporter permease PstA -
  O2U04_RS00915 (O2U04_00915) pstB 188393..189187 (+) 795 WP_081510053.1 phosphate ABC transporter ATP-binding protein PstB -

Sequence

Protein


Download         Length: 605 a.a.        Molecular weight: 70543.76 Da        Isoelectric Point: 5.6527

>NTDB_id=766187 O2U04_RS00890 WP_283473581.1 183037..184854(+) (pepF) [Ligilactobacillus salivarius strain S40]
MSEKKAKRLLQRNEVPEELTWDLTKVFKSDEEFEKEYQAVKDEVQNFRKLQGTMDQGSQRFLQIIENFLNINRKFEKVYV
YASMKNDQDTTNAKYQGYNEMVDALAAEFSESISWFEPELLELDEDKLKKYFVEKKELKQYEHLIESMLVMRKHTLDKKS
ESLLAGASDIFGTSQNVFGILNNADLKFPIVKDDNGDDIQLSHGVYGKLIESTNREVRKAAFKGLYSVYDQFKHTMATTL
IGNVKVHNFKARVRNYKDAREAATTSNHIPTEVYDVLLEQVHKNLPLLHRYVKLRKKILGVDELHMYDMYTPLTEDSKLT
YNYIQAQIEAKKALEVLGMDYLTHVSEAFENRWIDVVENKGKRSGAYSSGVYDTPPYILLNWQDNLENLFTLVHEMGHSM
HSYYTSHNQPYQYGDYPIFLAEIASTTNENILTDYLLKNNDKKEILIYILNHYLDGFKGTVYRQTQFAEFEKWIHEQNSK
GVPLTAKSISEYYLELNKKYYGSDVISDPEIALEWARIPHFYYNFYVYQYATGFAAATTLAENILSGDENKLNKYLTYLK
AGSSKYPLEVMKDAGVDMTDSSYLEKAFKVFEERLNQLETLLSEK

Nucleotide


Download         Length: 1818 bp        

>NTDB_id=766187 O2U04_RS00890 WP_283473581.1 183037..184854(+) (pepF) [Ligilactobacillus salivarius strain S40]
ATGTCTGAAAAGAAAGCAAAAAGATTACTTCAGAGAAATGAAGTTCCAGAAGAATTAACGTGGGATTTAACAAAAGTATT
TAAAAGTGATGAAGAGTTCGAAAAAGAATACCAAGCTGTAAAAGATGAGGTACAGAACTTCAGAAAATTACAAGGTACGA
TGGATCAAGGTAGTCAAAGATTTTTACAAATTATTGAAAATTTCTTAAATATTAATAGGAAATTTGAAAAAGTTTATGTA
TATGCAAGTATGAAAAATGATCAAGATACTACAAACGCCAAGTATCAAGGATATAATGAAATGGTTGACGCATTAGCTGC
TGAATTTTCAGAATCTATATCCTGGTTTGAACCAGAGTTACTAGAATTAGATGAAGATAAACTAAAGAAATATTTTGTAG
AAAAAAAAGAATTAAAACAGTATGAACATTTAATTGAGAGTATGTTGGTCATGAGAAAACATACGCTTGATAAAAAAAGT
GAGTCTTTATTAGCTGGAGCTAGTGATATCTTTGGAACATCGCAAAATGTTTTTGGTATTTTAAACAACGCAGATCTAAA
GTTTCCAATAGTAAAAGATGATAATGGTGATGATATTCAATTATCGCATGGTGTTTATGGAAAATTAATAGAATCTACAA
ATAGGGAAGTTAGAAAAGCTGCATTCAAAGGATTGTACAGTGTCTACGATCAATTTAAGCATACAATGGCGACAACATTA
ATTGGAAATGTTAAGGTACATAACTTTAAAGCAAGAGTTCGTAATTATAAAGATGCTAGAGAAGCTGCCACAACATCTAA
CCATATTCCAACAGAAGTTTATGATGTATTACTGGAACAAGTACACAAAAATCTTCCTTTACTACATCGCTATGTAAAAC
TTAGAAAGAAGATACTAGGTGTTGATGAACTCCATATGTATGATATGTATACACCGTTAACAGAAGATAGTAAGCTTACT
TACAATTATATTCAAGCACAAATTGAAGCAAAAAAAGCACTTGAAGTATTGGGAATGGATTATTTAACGCACGTTAGTGA
AGCATTTGAAAATCGTTGGATAGATGTAGTTGAAAATAAAGGAAAGAGAAGCGGAGCATATTCATCAGGAGTTTATGATA
CTCCACCATATATCTTATTAAATTGGCAAGATAATTTAGAAAATCTTTTTACTTTGGTACACGAGATGGGACATAGTATG
CATAGTTATTATACTAGTCATAATCAACCTTATCAGTATGGAGATTATCCAATATTTTTGGCAGAAATAGCTTCAACGAC
TAATGAAAATATTTTGACAGATTATCTATTAAAGAATAACGATAAAAAAGAGATATTAATTTATATTTTAAATCACTATT
TAGATGGATTTAAAGGTACGGTATATCGTCAAACACAATTTGCAGAATTTGAAAAATGGATTCATGAACAAAATTCCAAA
GGAGTACCACTAACTGCTAAATCAATTTCTGAGTATTACTTAGAATTAAATAAGAAATACTATGGTAGTGATGTAATAAG
TGATCCTGAGATAGCTTTAGAATGGGCTAGAATTCCGCATTTCTATTATAATTTCTATGTTTATCAATATGCGACAGGAT
TTGCAGCAGCAACTACTTTAGCTGAAAATATTTTATCTGGTGATGAAAATAAATTAAATAAATATTTAACTTACTTAAAA
GCAGGTAGTAGTAAATATCCATTGGAAGTTATGAAAGATGCGGGTGTGGATATGACAGATTCTTCATACTTAGAGAAAGC
ATTTAAAGTTTTTGAAGAAAGATTAAATCAATTAGAGACATTATTGTCAGAAAAATAG

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(209-589)

Oligopeptidase F (Peptidase_M3_N)

(119-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

53.209

97.851

0.521