Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   O2U02_RS07330 Genome accession   NZ_CP114509
Coordinates   1420942..1422759 (-) Length   605 a.a.
NCBI ID   WP_283473581.1    Uniprot ID   -
Organism   Ligilactobacillus salivarius strain S35     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1415942..1427759
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  O2U02_RS07305 (O2U02_07305) pstB 1416609..1417403 (-) 795 WP_081510053.1 phosphate ABC transporter ATP-binding protein PstB -
  O2U02_RS07310 (O2U02_07310) pstA 1417408..1418298 (-) 891 WP_003701551.1 phosphate ABC transporter permease PstA -
  O2U02_RS07315 (O2U02_07315) pstC 1418298..1419215 (-) 918 WP_283473577.1 phosphate ABC transporter permease subunit PstC -
  O2U02_RS07320 (O2U02_07320) - 1419226..1420080 (-) 855 WP_283473579.1 phosphate ABC transporter substrate-binding protein -
  O2U02_RS07325 (O2U02_07325) - 1420257..1420853 (+) 597 WP_283474655.1 ClpXP adapter SpxH family protein -
  O2U02_RS07330 (O2U02_07330) pepF 1420942..1422759 (-) 1818 WP_283473581.1 oligoendopeptidase F Regulator
  O2U02_RS07335 (O2U02_07335) - 1422857..1423756 (-) 900 WP_283473583.1 competence protein CoiA family protein -
  O2U02_RS07340 (O2U02_07340) - 1423806..1424567 (-) 762 WP_283473585.1 adaptor protein MecA -
  O2U02_RS07345 (O2U02_07345) - 1424671..1426317 (-) 1647 WP_283473587.1 phosphoenolpyruvate carboxykinase (ATP) -

Sequence

Protein


Download         Length: 605 a.a.        Molecular weight: 70543.76 Da        Isoelectric Point: 5.6527

>NTDB_id=766147 O2U02_RS07330 WP_283473581.1 1420942..1422759(-) (pepF) [Ligilactobacillus salivarius strain S35]
MSEKKAKRLLQRNEVPEELTWDLTKVFKSDEEFEKEYQAVKDEVQNFRKLQGTMDQGSQRFLQIIENFLNINRKFEKVYV
YASMKNDQDTTNAKYQGYNEMVDALAAEFSESISWFEPELLELDEDKLKKYFVEKKELKQYEHLIESMLVMRKHTLDKKS
ESLLAGASDIFGTSQNVFGILNNADLKFPIVKDDNGDDIQLSHGVYGKLIESTNREVRKAAFKGLYSVYDQFKHTMATTL
IGNVKVHNFKARVRNYKDAREAATTSNHIPTEVYDVLLEQVHKNLPLLHRYVKLRKKILGVDELHMYDMYTPLTEDSKLT
YNYIQAQIEAKKALEVLGMDYLTHVSEAFENRWIDVVENKGKRSGAYSSGVYDTPPYILLNWQDNLENLFTLVHEMGHSM
HSYYTSHNQPYQYGDYPIFLAEIASTTNENILTDYLLKNNDKKEILIYILNHYLDGFKGTVYRQTQFAEFEKWIHEQNSK
GVPLTAKSISEYYLELNKKYYGSDVISDPEIALEWARIPHFYYNFYVYQYATGFAAATTLAENILSGDENKLNKYLTYLK
AGSSKYPLEVMKDAGVDMTDSSYLEKAFKVFEERLNQLETLLSEK

Nucleotide


Download         Length: 1818 bp        

>NTDB_id=766147 O2U02_RS07330 WP_283473581.1 1420942..1422759(-) (pepF) [Ligilactobacillus salivarius strain S35]
ATGTCTGAAAAGAAAGCAAAAAGATTACTTCAGAGAAATGAAGTTCCAGAAGAATTAACGTGGGATTTAACAAAAGTATT
TAAAAGTGATGAAGAGTTCGAAAAAGAATACCAAGCTGTAAAAGATGAGGTACAGAACTTCAGAAAATTACAAGGTACGA
TGGATCAAGGTAGTCAAAGATTTTTACAAATTATTGAAAATTTCTTAAATATTAATAGGAAATTTGAAAAAGTTTATGTA
TATGCAAGTATGAAAAATGATCAAGATACTACAAACGCCAAGTATCAAGGATATAATGAAATGGTTGACGCATTAGCTGC
TGAATTTTCAGAATCTATATCCTGGTTTGAACCAGAGTTACTAGAATTAGATGAAGATAAACTAAAGAAATATTTTGTAG
AAAAAAAAGAATTAAAACAGTATGAACATTTAATTGAGAGTATGTTGGTCATGAGAAAACATACGCTTGATAAAAAAAGT
GAGTCTTTATTAGCTGGAGCTAGTGATATCTTTGGAACATCGCAAAATGTTTTTGGTATTTTAAACAACGCAGATCTAAA
GTTTCCAATAGTAAAAGATGATAATGGTGATGATATTCAATTATCGCATGGTGTTTATGGAAAATTAATAGAATCTACAA
ATAGGGAAGTTAGAAAAGCTGCATTCAAAGGATTGTACAGTGTCTACGATCAATTTAAGCATACAATGGCGACAACATTA
ATTGGAAATGTTAAGGTACATAACTTTAAAGCAAGAGTTCGTAATTATAAAGATGCTAGAGAAGCTGCCACAACATCTAA
CCATATTCCAACAGAAGTTTATGATGTATTACTGGAACAAGTACACAAAAATCTTCCTTTACTACATCGCTATGTAAAAC
TTAGAAAGAAGATACTAGGTGTTGATGAACTCCATATGTATGATATGTATACACCGTTAACAGAAGATAGTAAGCTTACT
TACAATTATATTCAAGCACAAATTGAAGCAAAAAAAGCACTTGAAGTATTGGGAATGGATTATTTAACGCACGTTAGTGA
AGCATTTGAAAATCGTTGGATAGATGTAGTTGAAAATAAAGGAAAGAGAAGCGGAGCATATTCATCAGGAGTTTATGATA
CTCCACCATATATCTTATTAAATTGGCAAGATAATTTAGAAAATCTTTTTACTTTGGTACACGAGATGGGACATAGTATG
CATAGTTATTATACTAGTCATAATCAACCTTATCAGTATGGAGATTATCCAATATTTTTGGCAGAAATAGCTTCAACGAC
TAATGAAAATATTTTGACAGATTATCTATTAAAGAATAACGATAAAAAAGAGATATTAATTTATATTTTAAATCACTATT
TAGATGGATTTAAAGGTACGGTATATCGTCAAACACAATTTGCAGAATTTGAAAAATGGATTCATGAACAAAATTCCAAA
GGAGTACCACTAACTGCTAAATCAATTTCTGAGTATTACTTAGAATTAAATAAGAAATACTATGGTAGTGATGTAATAAG
TGATCCTGAGATAGCTTTAGAATGGGCTAGAATTCCGCATTTCTATTATAATTTCTATGTTTATCAATATGCGACAGGAT
TTGCAGCAGCAACTACTTTAGCTGAAAATATTTTATCTGGTGATGAAAATAAATTAAATAAATATTTAACTTACTTAAAA
GCAGGTAGTAGTAAATATCCATTGGAAGTTATGAAAGATGCGGGTGTGGATATGACAGATTCTTCATACTTAGAGAAAGC
ATTTAAAGTTTTTGAAGAAAGATTAAATCAATTAGAGACATTATTGTCAGAAAAATAG

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(209-589)

Oligopeptidase F (Peptidase_M3_N)

(119-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

53.209

97.851

0.521