Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   O2U02_RS05935 Genome accession   NZ_CP114509
Coordinates   1205383..1207050 (-) Length   555 a.a.
NCBI ID   WP_098034067.1    Uniprot ID   -
Organism   Ligilactobacillus salivarius strain S35     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1200383..1212050
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  O2U02_RS05905 (O2U02_05905) - 1201038..1202852 (-) 1815 WP_283473172.1 DUF2207 domain-containing protein -
  O2U02_RS05910 (O2U02_05910) - 1202957..1203256 (-) 300 WP_003699862.1 nucleoside triphosphate pyrophosphohydrolase family protein -
  O2U02_RS05915 (O2U02_05915) yihA 1203274..1203864 (-) 591 WP_283473174.1 ribosome biogenesis GTP-binding protein YihA/YsxC -
  O2U02_RS05920 (O2U02_05920) - 1203947..1204171 (-) 225 WP_003699860.1 YneF family protein -
  O2U02_RS05925 (O2U02_05925) - 1204298..1204552 (-) 255 WP_003704077.1 DUF896 domain-containing protein -
  O2U02_RS05930 (O2U02_05930) lexA 1204699..1205319 (+) 621 WP_003699857.1 transcriptional repressor LexA -
  O2U02_RS05935 (O2U02_05935) recN 1205383..1207050 (-) 1668 WP_098034067.1 DNA repair protein RecN Machinery gene
  O2U02_RS05940 (O2U02_05940) - 1207055..1207513 (-) 459 WP_003699854.1 ArgR family transcriptional regulator -
  O2U02_RS05945 (O2U02_05945) - 1207538..1208365 (-) 828 WP_081509248.1 TlyA family RNA methyltransferase -
  O2U02_RS05950 (O2U02_05950) - 1208368..1209285 (-) 918 WP_003699850.1 polyprenyl synthetase family protein -
  O2U02_RS05955 (O2U02_05955) - 1209251..1209478 (-) 228 WP_003699848.1 exodeoxyribonuclease VII small subunit -
  O2U02_RS05960 (O2U02_05960) xseA 1209478..1210818 (-) 1341 WP_283473180.1 exodeoxyribonuclease VII large subunit -
  O2U02_RS05965 (O2U02_05965) folD 1210811..1211668 (-) 858 WP_098034065.1 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD -

Sequence

Protein


Download         Length: 555 a.a.        Molecular weight: 63324.05 Da        Isoelectric Point: 4.7891

>NTDB_id=766143 O2U02_RS05935 WP_098034067.1 1205383..1207050(-) (recN) [Ligilactobacillus salivarius strain S35]
MLQELSIRDFAIIDEIQISFQPKMTVLTGETGAGKSIIIDALGLLAGGRGSTEFIRKGEKKAVIQGLFTLPREANTYNIL
EEYGIDSEDGQIILQRDLYRGGRNICRINGMMVNLATLRKVGETLIDIHGQNEHQELMKPENHIDLLDEYDKKTSELRIQ
YQVVYQNYRKLKLSMEKKEADEKAWAQRLDMLNFQVKEIEEADLKINEEDELVEEKNKLDNFQAIHDALELSYQILSGEK
IDVVGNLGNAMNELSDVSDLSENLQEINTKISDAFYSLEDAARDISDELDSMEWNGERLNEIEERLELIHQLKRKYGDTI
EDILHYHSRIEKELREMENAEQNSEKQERQLSEALEKVKELAIKLSKQRKKSAKKLEKMIHEQLSALYMDKAVFEVKFLN
NSKLYSKGIDKVEFYIQTNPGEEMGPLAKIASGGELSRIMLALKTIFSQKMGVTSIIFDEVDTGVSGRVAQAIAEKISQI
SNNSQVLCITHLPQVAAIADNHYYISKSVNDGRTETSLKELDEKQKIREIARMLSGSEITELTLKHAEELIKMSK

Nucleotide


Download         Length: 1668 bp        

>NTDB_id=766143 O2U02_RS05935 WP_098034067.1 1205383..1207050(-) (recN) [Ligilactobacillus salivarius strain S35]
ATGTTACAAGAATTATCAATAAGAGATTTCGCCATTATAGATGAAATACAAATATCATTTCAACCTAAGATGACAGTATT
GACGGGTGAAACAGGTGCTGGTAAATCAATTATTATTGATGCCCTAGGTTTACTAGCAGGAGGTAGAGGTTCTACTGAAT
TCATTCGTAAGGGTGAGAAAAAAGCTGTTATTCAGGGGTTATTTACATTACCTAGAGAAGCTAATACTTACAACATTTTG
GAAGAATACGGAATAGATTCTGAAGATGGACAAATAATCTTGCAAAGAGATTTATATCGAGGTGGAAGAAATATTTGTCG
CATCAATGGAATGATGGTAAATTTGGCAACTTTACGAAAGGTAGGAGAAACATTAATTGATATTCATGGACAGAATGAGC
ATCAAGAATTGATGAAGCCAGAAAACCATATAGATTTGTTAGATGAATATGATAAAAAAACATCTGAGTTAAGAATTCAA
TATCAAGTTGTGTATCAAAATTATCGTAAACTAAAATTATCAATGGAAAAAAAAGAAGCTGATGAAAAGGCATGGGCTCA
AAGACTAGATATGCTAAATTTCCAAGTCAAAGAAATTGAAGAAGCTGATTTAAAAATTAATGAAGAAGATGAACTAGTCG
AAGAAAAAAATAAATTGGATAATTTTCAAGCAATACATGATGCTTTAGAATTGAGTTATCAAATTTTATCTGGTGAAAAA
ATAGATGTAGTTGGAAATTTAGGAAATGCAATGAATGAATTAAGCGATGTTTCAGATTTATCAGAAAATCTTCAAGAAAT
CAATACTAAAATTTCAGATGCTTTTTATAGTTTAGAAGATGCCGCTCGTGATATTTCAGATGAACTTGATTCAATGGAGT
GGAATGGAGAAAGGTTAAATGAAATAGAGGAAAGATTAGAGTTGATCCACCAATTGAAGAGAAAATATGGTGATACAATA
GAGGATATTTTGCATTATCATAGTAGAATTGAAAAAGAATTAAGAGAAATGGAAAATGCGGAACAAAATTCAGAAAAGCA
AGAAAGACAATTATCTGAGGCATTAGAAAAAGTAAAAGAATTGGCAATAAAACTTTCGAAACAGCGGAAGAAAAGCGCTA
AAAAATTAGAAAAAATGATCCATGAACAATTAAGTGCATTATATATGGACAAAGCTGTATTTGAAGTTAAATTTTTAAAT
AATTCTAAATTGTATTCTAAAGGTATCGATAAAGTTGAATTTTATATTCAAACTAATCCAGGTGAAGAAATGGGCCCATT
AGCTAAGATAGCTTCAGGTGGTGAACTTTCACGAATAATGTTAGCTTTAAAAACAATTTTTTCTCAAAAGATGGGTGTCA
CAAGTATTATCTTTGATGAAGTTGATACTGGTGTTAGTGGTCGTGTAGCTCAAGCGATTGCTGAAAAAATAAGCCAAATT
TCAAATAATTCACAAGTTTTATGCATTACTCACTTACCGCAAGTTGCAGCAATTGCAGATAATCATTACTATATTTCAAA
ATCTGTCAACGATGGTAGAACAGAAACTTCATTAAAAGAATTAGATGAAAAACAAAAAATTAGAGAGATAGCAAGAATGT
TATCTGGATCTGAAATTACAGAATTAACATTGAAACATGCAGAAGAATTAATTAAAATGTCAAAATAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-508)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

48.427

100

0.499