Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   QIH96_RS00620 Genome accession   NZ_CP126005
Coordinates   143972..145585 (-) Length   537 a.a.
NCBI ID   WP_028155459.1    Uniprot ID   -
Organism   Bradyrhizobium japonicum strain S04E-Bj     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 138972..150585
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QIH96_RS00605 (QIH96_00605) - 140594..142330 (-) 1737 WP_304492200.1 ShlB/FhaC/HecB family hemolysin secretion/activation protein -
  QIH96_RS00610 (QIH96_00610) ptsN 142605..143066 (-) 462 WP_008141251.1 PTS IIA-like nitrogen regulatory protein PtsN -
  QIH96_RS00615 (QIH96_00615) raiA 143288..143887 (-) 600 WP_028155458.1 ribosome-associated translation inhibitor RaiA -
  QIH96_RS00620 (QIH96_00620) rpoN/rpoN1 143972..145585 (-) 1614 WP_028155459.1 RNA polymerase factor sigma-54 Machinery gene
  QIH96_RS00625 (QIH96_00625) lptB 145676..146686 (-) 1011 WP_248880721.1 LPS export ABC transporter ATP-binding protein -
  QIH96_RS00630 (QIH96_00630) - 146933..147652 (-) 720 WP_304492201.1 LptA/OstA family protein -
  QIH96_RS00635 (QIH96_00635) lptC 147658..148389 (-) 732 WP_028155461.1 LPS export ABC transporter periplasmic protein LptC -
  QIH96_RS00640 (QIH96_00640) - 148535..149149 (-) 615 WP_028155462.1 ribonuclease D -

Sequence

Protein


Download         Length: 537 a.a.        Molecular weight: 58888.94 Da        Isoelectric Point: 4.5192

>NTDB_id=766067 QIH96_RS00620 WP_028155459.1 143972..145585(-) (rpoN/rpoN1) [Bradyrhizobium japonicum strain S04E-Bj]
MALTQRLEFRQSQSLVMTPQLMQAIKLLQLSNLDLTTFVEEELERNPLLERANDEAPAGEAPAETGQFSDSDGGHNDEPG
GGPGEAFEPGQEEWMSKDLGTRAEIEQTLDTGLDNVFSEEPAEAAARNAQDAAPTTYTEWGGGASGDEDYNLEAFVAAEI
TLGDHLAEQLSVAFTGPAQRMIGQYLIDLVDEAGYLPPDLGQAAERLGASQADVEDVLAVLQKFDPPGVCARNLSECLAI
QLRELDRYDPAMQALVEHLDLLAKRDIASLRKLCGVDDEDIADMIGEIRRLNPKPGMKFGSARLQTMVPDVYVRPGPDGG
WHVELNSDTLPRVLVNQTYYSELSKKIGKDGDKSYFTDALQNATWLVRALDQRARTILKVATEIVRQQDGFFTHGVAHLR
PLNLKAVADAIQMHESTVSRVTANKYMATNRGTFELKYFFTASIASADGGEAHSAEAVRHHIKQLIDSEAPAAILSDDTI
VERLRASGIDIARRTVAKYREAMRIPSSVQRRRDKQSALGNVLSTAMPDRSRNTEPA

Nucleotide


Download         Length: 1614 bp        

>NTDB_id=766067 QIH96_RS00620 WP_028155459.1 143972..145585(-) (rpoN/rpoN1) [Bradyrhizobium japonicum strain S04E-Bj]
ATGGCGCTCACGCAGAGATTAGAGTTCCGGCAATCGCAGTCGCTGGTCATGACGCCGCAGCTGATGCAGGCGATCAAGCT
GCTGCAATTGTCCAATCTCGATCTCACGACCTTCGTGGAAGAGGAACTCGAGCGGAACCCCCTGCTGGAGCGGGCCAACG
ACGAGGCCCCCGCGGGTGAAGCCCCGGCCGAGACCGGCCAGTTCAGCGATTCCGACGGGGGGCACAACGACGAGCCGGGC
GGCGGTCCGGGCGAGGCGTTCGAGCCAGGCCAGGAAGAATGGATGAGCAAGGATCTCGGCACCCGCGCCGAGATCGAGCA
GACCCTGGATACGGGCCTGGACAACGTCTTCTCCGAGGAACCGGCCGAGGCCGCCGCGCGCAACGCCCAGGATGCGGCGC
CGACCACCTATACCGAATGGGGCGGCGGTGCCTCCGGCGACGAGGACTACAATCTCGAAGCCTTCGTCGCCGCGGAAATC
ACGCTCGGCGACCATCTTGCCGAGCAGCTCTCGGTCGCCTTCACCGGCCCGGCGCAGCGCATGATCGGCCAGTACCTGAT
CGACCTCGTCGACGAGGCCGGCTATCTGCCGCCGGATCTCGGCCAGGCCGCCGAGCGCCTTGGCGCATCGCAAGCCGACG
TCGAGGACGTCCTTGCCGTGCTGCAAAAATTCGATCCGCCCGGCGTCTGCGCGCGCAATTTGAGCGAATGCCTGGCGATC
CAGCTCCGCGAACTCGACCGCTACGACCCGGCGATGCAGGCCCTCGTCGAGCACCTCGATCTGCTGGCGAAGCGCGACAT
CGCTTCGTTGCGCAAGCTCTGCGGCGTCGACGACGAGGACATCGCCGACATGATCGGCGAGATCCGCCGCCTCAATCCCA
AGCCCGGCATGAAGTTCGGCTCGGCGCGGCTCCAGACCATGGTGCCCGACGTCTATGTCCGCCCGGGCCCGGATGGCGGC
TGGCATGTCGAGCTCAACAGCGACACCTTGCCGCGCGTGCTGGTCAACCAGACCTATTATTCCGAGCTGTCGAAGAAGAT
CGGCAAGGACGGCGACAAGTCCTATTTCACCGACGCGCTCCAGAACGCGACCTGGCTGGTGCGCGCGCTCGATCAGCGCG
CCCGCACCATCCTGAAAGTTGCAACGGAAATCGTGCGCCAGCAGGACGGCTTCTTCACCCACGGCGTGGCGCATCTGCGG
CCGCTGAATCTGAAGGCCGTGGCCGACGCCATCCAGATGCATGAATCCACGGTGTCGCGCGTCACCGCCAACAAGTACAT
GGCGACAAATCGCGGCACATTCGAATTGAAATATTTCTTCACGGCCTCGATCGCCTCCGCCGACGGCGGCGAGGCGCATT
CCGCCGAGGCCGTGCGCCACCACATCAAGCAGCTGATCGATTCGGAAGCGCCGGCGGCGATCCTGTCGGATGACACCATC
GTGGAACGCTTACGCGCCTCGGGAATTGATATTGCCCGCCGCACGGTCGCGAAGTATCGCGAAGCCATGCGCATTCCCTC
GTCGGTACAACGCCGCCGTGACAAGCAGAGCGCTCTTGGTAACGTCCTCTCCACCGCAATGCCCGATCGCTCCCGCAACA
CCGAGCCGGCCTGA

Domains

Predicted by InterProScan.

Sigma-54, DNA binding domain (Sigma54_DBD)

(354-513)

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(6-50)

Sigma-54 factor, core binding domain (Sigma54_CBD)

(152-339)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

36.969

100

0.372