Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   QNK08_RS15010 Genome accession   NZ_CP125983
Coordinates   2803245..2803955 (-) Length   236 a.a.
NCBI ID   WP_015714539.1    Uniprot ID   -
Organism   Bacillus subtilis strain ZKY04     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 2798245..2808955
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QNK08_RS14990 (QNK08_15020) cysK 2798295..2799230 (+) 936 WP_033880436.1 cysteine synthase A -
  QNK08_RS14995 (QNK08_15025) pepV 2799264..2800655 (-) 1392 WP_014477689.1 dipeptidase PepV -
  QNK08_RS15000 (QNK08_15030) pbuO 2800752..2802050 (+) 1299 WP_069964255.1 hypoxanthine/guanine permease PbuO -
  QNK08_RS15005 (QNK08_15035) ythQ 2802091..2803248 (-) 1158 WP_069964256.1 ABC transporter permease -
  QNK08_RS15010 (QNK08_15040) pptA 2803245..2803955 (-) 711 WP_015714539.1 ABC transporter ATP-binding protein Regulator
  QNK08_RS15015 (QNK08_15045) ytzE 2804245..2804466 (+) 222 WP_003152337.1 DeoR family transcriptional regulator -
  QNK08_RS15020 (QNK08_15050) rsuA 2804588..2805307 (-) 720 WP_017695479.1 pseudouridine synthase -
  QNK08_RS15025 (QNK08_15055) murJ 2805376..2807010 (-) 1635 WP_264379339.1 lipid II flippase MurJ -
  QNK08_RS15030 (QNK08_15060) ytfP 2807213..2808475 (+) 1263 WP_003229222.1 NAD(P)/FAD-dependent oxidoreductase -

Sequence

Protein


Download         Length: 236 a.a.        Molecular weight: 26573.65 Da        Isoelectric Point: 5.5930

>NTDB_id=766035 QNK08_RS15010 WP_015714539.1 2803245..2803955(-) (pptA) [Bacillus subtilis strain ZKY04]
MTNLLEASIEQAGYTSRKKVLTDVFLEVRKGELVGLIGANGAGKSTAIKAILGLSEDFKGHIAWNDCSFAYIPEHPSFYE
ELTLWEHLDLISTLHGIEEREFAHRAQSLLQTFSLDHVKHELPVTFSKGMQQKLMLIQAFLSKPDMYVIDEPFIGLDPIS
TKRFVDMLKAEKERGAGILMCTHVLDTAEKICDRFYMIEKGSLFLQGTLKDIQDKTGLEGQSLLDCFYKAVQGDRP

Nucleotide


Download         Length: 711 bp        

>NTDB_id=766035 QNK08_RS15010 WP_015714539.1 2803245..2803955(-) (pptA) [Bacillus subtilis strain ZKY04]
TTGACAAATTTGCTTGAAGCTTCAATAGAACAGGCCGGGTATACAAGCCGAAAAAAAGTGCTCACCGATGTTTTTCTGGA
AGTCAGAAAAGGGGAACTAGTTGGACTGATCGGAGCTAACGGCGCCGGAAAAAGCACCGCAATCAAGGCGATACTCGGCC
TTTCAGAAGATTTTAAAGGGCATATTGCCTGGAACGACTGTTCATTTGCATATATTCCGGAGCATCCGTCCTTTTACGAA
GAACTGACGCTGTGGGAGCATTTGGATCTGATCAGCACACTCCACGGCATTGAAGAGAGAGAATTTGCGCATCGGGCCCA
AAGCCTGCTGCAGACGTTTTCGCTTGATCATGTCAAACATGAGCTGCCTGTCACCTTTTCGAAGGGCATGCAGCAAAAAC
TAATGCTTATCCAGGCCTTTCTCTCTAAGCCGGATATGTATGTGATTGATGAACCGTTTATCGGCCTTGATCCGATATCG
ACGAAACGCTTTGTGGACATGCTTAAGGCTGAAAAAGAACGTGGAGCCGGAATTCTTATGTGCACGCATGTACTCGATAC
CGCGGAAAAAATCTGTGACCGGTTTTATATGATTGAGAAAGGTTCATTATTTCTCCAAGGCACGTTAAAAGATATTCAGG
ACAAGACCGGATTAGAGGGGCAGTCATTGCTTGACTGTTTTTATAAGGCAGTTCAAGGTGATCGGCCATGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(21-153)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

44.017

99.153

0.436
  pptA Streptococcus thermophilus LMD-9

43.59

99.153

0.432