Detailed information    

insolico Bioinformatically predicted

Overview

Name   braR   Type   Regulator
Locus tag   O3S97_RS01560 Genome accession   NZ_CP114450
Coordinates   335402..336067 (+) Length   221 a.a.
NCBI ID   WP_002447011.1    Uniprot ID   -
Organism   Staphylococcus epidermidis strain SE 4.8     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 330402..341067
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  O3S97_RS01545 (O3S97_01550) - 331758..333302 (+) 1545 WP_002447008.1 NAD(P)H-binding protein -
  O3S97_RS01550 (O3S97_01555) - 333426..334895 (-) 1470 WP_002447009.1 alkaline phosphatase -
  O3S97_RS01555 (O3S97_01560) - 335192..335371 (+) 180 WP_002447010.1 hypothetical protein -
  O3S97_RS01560 (O3S97_01565) braR 335402..336067 (+) 666 WP_002447011.1 response regulator transcription factor Regulator
  O3S97_RS01565 (O3S97_01570) braS 336073..336969 (+) 897 WP_060545547.1 sensor histidine kinase Regulator
  O3S97_RS01570 (O3S97_01575) - 337080..337829 (+) 750 WP_060545503.1 ABC transporter ATP-binding protein -
  O3S97_RS01575 (O3S97_01580) - 337831..339843 (+) 2013 WP_060545505.1 FtsX-like permease family protein -
  O3S97_RS01580 (O3S97_01585) - 339947..340537 (+) 591 WP_002490857.1 DUF4064 domain-containing protein -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 25643.77 Da        Isoelectric Point: 5.1924

>NTDB_id=765975 O3S97_RS01560 WP_002447011.1 335402..336067(+) (braR) [Staphylococcus epidermidis strain SE 4.8]
MKIFIVEDDLVIAESLANELSKWNYEVHVIDNFEKIMEDFRRVEPQLVLLDINLPTLNGFHWCQEIRKVSRVPIMFISSR
TDNMDQILAIQMGGDDFIEKPFNLSLTVAKIQALLRRTYDLSIARDEIAVKGCKLIVDEAKLSKDNEHVQLSLTELQILK
LLFQNENKYVSRTALIEKCWESENFIDDNTLAVNMTRLRKKLLSIGVDNLIETKKNVGYRV

Nucleotide


Download         Length: 666 bp        

>NTDB_id=765975 O3S97_RS01560 WP_002447011.1 335402..336067(+) (braR) [Staphylococcus epidermidis strain SE 4.8]
ATGAAGATTTTCATTGTAGAAGACGATTTAGTGATTGCTGAAAGTTTAGCTAATGAGCTATCTAAATGGAATTATGAGGT
TCATGTGATTGATAATTTTGAAAAGATAATGGAAGATTTTCGCAGAGTAGAACCACAACTCGTATTATTAGATATCAATC
TACCAACCCTTAATGGCTTCCATTGGTGCCAAGAAATACGAAAAGTATCTCGTGTGCCTATTATGTTTATTAGTTCAAGA
ACAGATAATATGGATCAAATTCTGGCTATTCAAATGGGTGGCGATGATTTTATCGAGAAACCATTTAACTTGTCTTTAAC
AGTAGCTAAAATTCAGGCACTATTGCGTCGCACTTATGATTTATCAATAGCTCGTGATGAAATAGCTGTTAAAGGTTGTA
AACTAATTGTTGATGAGGCGAAGCTTAGCAAGGATAATGAACATGTTCAACTTTCCTTAACAGAGCTACAGATATTAAAA
TTGTTATTTCAAAATGAAAATAAATATGTAAGTCGTACAGCTTTAATTGAGAAATGTTGGGAGTCTGAGAATTTTATTGA
TGACAATACGCTAGCAGTAAATATGACGCGATTACGAAAAAAATTACTTTCTATCGGTGTCGATAATTTAATTGAGACAA
AGAAAAATGTAGGATACAGGGTTTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(3-111)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(147-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  braR Staphylococcus aureus N315

78.733

100

0.787