Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   O3S71_RS25825 Genome accession   NZ_CP114406
Coordinates   4974517..4974801 (+) Length   94 a.a.
NCBI ID   WP_000843036.1    Uniprot ID   A0A9W5VII1
Organism   Bacillus thuringiensis serovar tenebrionis strain NB-176     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 4969517..4979801
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  O3S71_RS25810 rnmV 4970341..4970898 (-) 558 WP_000692841.1 ribonuclease M5 -
  O3S71_RS25815 - 4971114..4971881 (-) 768 WP_000895845.1 TatD family hydrolase -
  O3S71_RS25820 metG 4972048..4974030 (-) 1983 WP_000134138.1 methionine--tRNA ligase -
  O3S71_RS25825 abrB 4974517..4974801 (+) 285 WP_000843036.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  O3S71_RS25830 rsmI 4974822..4975697 (-) 876 WP_016078236.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  O3S71_RS25835 - 4975666..4975956 (-) 291 WP_000414350.1 GIY-YIG nuclease family protein -
  O3S71_RS25840 - 4975943..4976683 (-) 741 WP_001055355.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  O3S71_RS25845 yabA 4976766..4977116 (-) 351 WP_000412063.1 DNA replication initiation control protein YabA -
  O3S71_RS25850 - 4977131..4977958 (-) 828 WP_000272429.1 stage 0 sporulation family protein -
  O3S71_RS25855 holB 4977964..4978947 (-) 984 WP_000978578.1 DNA polymerase III subunit delta' -
  O3S71_RS25860 tmk 4978983..4979609 (-) 627 WP_000677218.1 dTMP kinase -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10490.17 Da        Isoelectric Point: 4.7174

>NTDB_id=765952 O3S71_RS25825 WP_000843036.1 4974517..4974801(+) (abrB) [Bacillus thuringiensis serovar tenebrionis strain NB-176]
MKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDGNLSLAEGKIILSKEGAE
QILNELQDYIETAK

Nucleotide


Download         Length: 285 bp        

>NTDB_id=765952 O3S71_RS25825 WP_000843036.1 4974517..4974801(+) (abrB) [Bacillus thuringiensis serovar tenebrionis strain NB-176]
ATGAAATCTACTGGTATTGTTCGTAAAGTTGATGAATTAGGTCGTGTAGTAATTCCAATCGAATTACGCCGTACTTTAGG
TATTGCAGAAAAGGATGCTCTTGAAATCTATGTTGATGACGAGAAAATCATCTTAAAAAAATATAAACCAAACATGACTT
GCCAAGTAACTGGTGAAGTATCTGACGGTAACCTTTCTTTAGCTGAAGGTAAAATCATCTTAAGCAAAGAAGGCGCTGAG
CAAATCTTAAACGAACTTCAAGATTATATCGAAACAGCAAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-89)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-50)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

85.106

100

0.851