Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   QNK08_RS04310 Genome accession   NZ_CP125983
Coordinates   837138..837854 (+) Length   238 a.a.
NCBI ID   WP_003233679.1    Uniprot ID   P39796
Organism   Bacillus subtilis strain ZKY04     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 832138..842854
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QNK08_RS04280 (QNK08_04290) - 832640..832777 (+) 138 WP_101172061.1 hypothetical protein -
  QNK08_RS04285 (QNK08_04295) yflB 832796..833188 (+) 393 WP_003233692.1 DUF1992 domain-containing protein -
  QNK08_RS04290 (QNK08_04300) - 833313..833517 (+) 205 Protein_794 sodium:alanine symporter family protein -
  QNK08_RS04295 (QNK08_04305) - 833513..833842 (-) 330 Protein_795 spore germination protein -
  QNK08_RS04300 (QNK08_04310) treP 833949..835361 (+) 1413 WP_069964053.1 PTS system trehalose-specific EIIBC component -
  QNK08_RS04305 (QNK08_04315) treC 835432..837117 (+) 1686 WP_014479164.1 alpha,alpha-phosphotrehalase -
  QNK08_RS04310 (QNK08_04320) treR 837138..837854 (+) 717 WP_003233679.1 trehalose operon repressor Regulator
  QNK08_RS04315 (QNK08_04325) hypO 837994..838659 (+) 666 WP_014476144.1 NAD(P)H-dependent oxidoreductase -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 27841.82 Da        Isoelectric Point: 7.1736

>NTDB_id=765944 QNK08_RS04310 WP_003233679.1 837138..837854(+) (treR) [Bacillus subtilis strain ZKY04]
MKVNKFITIYKDIAQQIEGGRWKAEEILPSEHELTAQYGTSRETVRKALHMLAQNGYIQKIRGKGSVVLNREKMQFPVSG
LVSFKELAQTLGKETKTTVHKFGLEPPSELIQKQLRANLDDDIWEVIRSRKIDGEHVILDKDYFFRKHVPHLTKEICENS
IYEYIEGELGLSISYAQKEIVAEPCTDEDRELLDLRGYDHMVVVRNYVFLEDTSLFQYTESRHRLDKFRFVDFARRGK

Nucleotide


Download         Length: 717 bp        

>NTDB_id=765944 QNK08_RS04310 WP_003233679.1 837138..837854(+) (treR) [Bacillus subtilis strain ZKY04]
ATGAAGGTGAATAAATTCATCACAATTTATAAAGACATCGCACAGCAAATTGAAGGCGGCCGATGGAAAGCGGAGGAGAT
TCTTCCGTCTGAACATGAGTTGACCGCACAGTACGGTACATCAAGAGAAACGGTCCGAAAGGCGCTTCATATGCTCGCGC
AAAACGGTTATATCCAGAAAATCAGGGGAAAAGGCTCCGTCGTGCTCAATCGTGAAAAAATGCAGTTTCCCGTTTCGGGC
CTTGTCAGCTTCAAGGAGCTCGCGCAAACGCTTGGCAAAGAAACGAAAACAACTGTACACAAATTCGGGCTGGAGCCTCC
GTCAGAGCTGATCCAAAAACAGCTCCGGGCCAATCTGGATGACGACATCTGGGAAGTCATCAGGTCTAGAAAGATTGACG
GGGAACATGTGATTTTGGACAAGGATTACTTTTTCAGAAAGCATGTCCCTCACCTGACGAAAGAAATTTGTGAAAACTCC
ATATATGAATATATAGAAGGAGAGCTCGGTCTTTCGATCAGTTACGCCCAAAAAGAAATTGTCGCCGAGCCGTGTACGGA
CGAGGACAGAGAGCTGCTCGATTTACGCGGCTATGACCATATGGTCGTGGTGAGAAACTACGTCTTTTTGGAGGATACCA
GTTTGTTTCAATATACGGAAAGCAGACACCGTCTCGACAAATTCCGATTTGTTGATTTTGCGCGGCGGGGGAAATGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, gntR family (GntR)

(8-68)

UTRA domain (UTRA)

(91-229)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 2OGG

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

42.308

98.319

0.416