Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   O3S72_RS26885 Genome accession   NZ_CP114392
Coordinates   5190089..5191216 (-) Length   375 a.a.
NCBI ID   WP_000470754.1    Uniprot ID   A0A9W3P6A6
Organism   Bacillus thuringiensis serovar tenebrionis strain NB125     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5185089..5196216
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  O3S72_RS26875 gyrA 5185567..5188038 (-) 2472 WP_001282868.1 DNA gyrase subunit A -
  O3S72_RS26880 gyrB 5188127..5190049 (-) 1923 WP_000435979.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  O3S72_RS26885 recF 5190089..5191216 (-) 1128 WP_000470754.1 DNA replication/repair protein RecF Machinery gene
  O3S72_RS26890 yaaA 5191229..5191441 (-) 213 WP_000680510.1 S4 domain-containing protein YaaA -
  O3S72_RS26895 dnaN 5191569..5192714 (-) 1146 WP_001212884.1 DNA polymerase III subunit beta -
  O3S72_RS26900 dnaA 5192893..5194233 (-) 1341 WP_000428018.1 chromosomal replication initiator protein DnaA -
  O3S72_RS26905 rpmH 5194798..5194932 (+) 135 WP_000831901.1 50S ribosomal protein L34 -
  O3S72_RS26910 rnpA 5195009..5195356 (+) 348 WP_000726621.1 ribonuclease P protein component -
  O3S72_RS26915 spoIIIJ 5195409..5196176 (+) 768 WP_000727741.1 YidC family membrane integrase SpoIIIJ -

Sequence

Protein


Download         Length: 375 a.a.        Molecular weight: 43318.66 Da        Isoelectric Point: 6.7809

>NTDB_id=765859 O3S72_RS26885 WP_000470754.1 5190089..5191216(-) (recF) [Bacillus thuringiensis serovar tenebrionis strain NB125]
MFISEIQLKNYRNYEKLELSFEDKVNVIIGENAQGKTNLMEAIYVLAMAKSHRTSNDRELIRWDEEFGQIKGKLQKRNSS
LSLELNISKKGKKAKLNQLEQQKLSQYIGVMNVVMFAPEDLNLVKGSPQVRRRFLDMELGQIAPIYLYELSQYQKVLTQR
NHLLKKMQGNSKNEETMLDVFTLQLIEHGAKILQKRFEFLHLLQEWAAPIHRGISRGLEELEIVYKPSVDVSESMDLSKI
KEVYYESFQSVKQREIFRGTTLIGPHRDDLQFFVNSKNVQVFGSQGQQRTTALSLKLAEIELIYSEVKEYPILLLDDVLS
ELDDYRQSHLLNTIQGKVQTFVTTTSVDGIEHETLKDAKTIHVTNGTVDCEIDRA

Nucleotide


Download         Length: 1128 bp        

>NTDB_id=765859 O3S72_RS26885 WP_000470754.1 5190089..5191216(-) (recF) [Bacillus thuringiensis serovar tenebrionis strain NB125]
TTGTTTATTTCAGAAATACAATTAAAAAACTATCGCAATTATGAAAAATTAGAGCTTTCCTTTGAAGATAAGGTAAATGT
AATTATCGGCGAAAATGCACAAGGGAAAACAAACTTGATGGAAGCTATTTATGTTTTAGCGATGGCGAAATCTCATAGAA
CCTCTAATGATCGCGAACTTATCCGCTGGGATGAAGAGTTTGGTCAAATAAAAGGGAAATTACAAAAAAGAAACAGTTCT
TTGTCTTTGGAATTAAATATTTCGAAAAAAGGTAAAAAGGCAAAATTAAATCAACTTGAACAACAAAAGTTAAGTCAATA
TATTGGCGTGATGAACGTTGTCATGTTTGCCCCAGAAGATTTAAATCTTGTAAAAGGAAGCCCTCAAGTAAGAAGACGCT
TTTTAGATATGGAATTAGGACAAATAGCTCCTATATATTTGTATGAATTAAGTCAATATCAAAAGGTGCTCACGCAACGA
AATCACTTGTTGAAAAAAATGCAAGGGAATAGTAAGAATGAGGAAACGATGTTGGATGTATTTACACTTCAACTAATTGA
GCATGGTGCGAAAATACTGCAAAAACGTTTTGAATTTTTGCATTTGCTACAGGAATGGGCAGCTCCAATTCATCGCGGTA
TAAGCCGTGGATTAGAAGAGTTAGAAATTGTCTATAAACCAAGTGTAGATGTATCAGAATCAATGGATTTGTCGAAAATA
AAAGAAGTATACTATGAAAGTTTTCAATCTGTGAAACAACGTGAAATTTTCCGTGGTACGACTTTAATTGGTCCTCATCG
TGATGATTTACAATTCTTCGTTAATAGTAAAAATGTTCAAGTCTTTGGTTCGCAAGGGCAACAACGAACGACCGCACTAT
CCCTAAAATTAGCTGAAATTGAATTAATTTATTCAGAGGTTAAAGAATATCCAATCCTTTTGCTGGATGATGTTTTATCA
GAATTAGACGATTATCGTCAATCACATCTGTTAAATACAATTCAAGGAAAGGTGCAAACATTTGTTACAACGACGAGTGT
CGACGGAATTGAACACGAAACATTAAAAGATGCGAAAACAATTCATGTAACGAACGGCACGGTAGATTGTGAAATAGATA
GGGCATAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-348)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Bacillus subtilis subsp. subtilis str. 168

66.033

98.133

0.648