Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   O3S72_RS20010 Genome accession   NZ_CP114392
Coordinates   3885776..3886099 (+) Length   107 a.a.
NCBI ID   WP_000578875.1    Uniprot ID   -
Organism   Bacillus thuringiensis serovar tenebrionis strain NB125     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 3880776..3891099
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  O3S72_RS19995 - 3881293..3882660 (-) 1368 WP_000028385.1 aldehyde dehydrogenase -
  O3S72_RS20000 inhA1 3882832..3885219 (-) 2388 WP_001035950.1 M6 family metalloprotease immune inhibitor InhA1 -
  O3S72_RS20005 - 3885562..3885696 (+) 135 WP_000276219.1 anti-repressor SinI family protein -
  O3S72_RS20010 sinR 3885776..3886099 (+) 324 WP_000578875.1 helix-turn-helix domain-containing protein Regulator
  O3S72_RS20015 calY 3886172..3886765 (-) 594 WP_000053713.1 biofilm matrix protein CalY -
  O3S72_RS20020 - 3887154..3887957 (-) 804 WP_080117682.1 DUF4047 domain-containing protein -
  O3S72_RS20025 - 3888077..3888664 (-) 588 WP_000172852.1 CalY family protein -
  O3S72_RS20030 sipW 3888725..3889294 (-) 570 WP_000767804.1 signal peptidase I SipW -
  O3S72_RS20035 - 3889489..3890775 (-) 1287 WP_000247025.1 D-alanyl-D-alanine carboxypeptidase family protein -

Sequence

Protein


Download         Length: 107 a.a.        Molecular weight: 12291.16 Da        Isoelectric Point: 9.9745

>NTDB_id=765843 O3S72_RS20010 WP_000578875.1 3885776..3886099(+) (sinR) [Bacillus thuringiensis serovar tenebrionis strain NB125]
MIGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNLQKNPSIQFLEKIAAVLQIPVDTLLHDETTKATNLDSEWTQLV
KDAMNSGVSKEQFREFLEFTKWKQNQK

Nucleotide


Download         Length: 324 bp        

>NTDB_id=765843 O3S72_RS20010 WP_000578875.1 3885776..3886099(+) (sinR) [Bacillus thuringiensis serovar tenebrionis strain NB125]
ATGATTGGAGAACGTATAAAACGCCTTCGTTTACAAAAAGGTATTTCATTAACTGAACTTGCCGAAAAAGCTGGCGTTGC
TAAATCTTACATTAGTTCTATAGAACGAAATTTACAAAAAAACCCTTCCATTCAGTTTCTTGAAAAAATCGCAGCAGTTC
TACAAATTCCAGTTGATACTTTACTTCATGATGAAACAACAAAGGCAACTAACCTAGACTCCGAATGGACACAACTCGTT
AAAGATGCAATGAACTCTGGTGTCTCCAAAGAACAATTTCGTGAATTTCTTGAATTTACAAAGTGGAAGCAAAATCAAAA
ATAA

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-60)

Anti-repressor SinI (SinI)

(72-99)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

67.89

100

0.692