Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapF   Type   Regulator
Locus tag   QNK10_RS02835 Genome accession   NZ_CP125982
Coordinates   537869..539014 (+) Length   381 a.a.
NCBI ID   WP_155118109.1    Uniprot ID   -
Organism   Bacillus subtilis strain ZKY05     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 532869..544014
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QNK10_RS02810 (QNK10_02825) yddF 532930..533256 (+) 327 WP_069964000.1 YddF family protein -
  QNK10_RS02815 (QNK10_02830) - 533260..535695 (+) 2436 WP_080478388.1 CD3337/EF1877 family mobilome membrane protein -
  QNK10_RS02820 (QNK10_02835) - 535692..536681 (+) 990 WP_259607224.1 lysozyme family protein -
  QNK10_RS02825 (QNK10_02840) - 536696..537202 (+) 507 WP_069964002.1 hypothetical protein -
  QNK10_RS02830 (QNK10_02845) - 537265..537651 (+) 387 WP_396127098.1 cystatin-like fold lipoprotein -
  QNK10_RS02835 (QNK10_02850) rapF 537869..539014 (+) 1146 WP_155118109.1 tetratricopeptide repeat protein Regulator
  QNK10_RS02840 (QNK10_02855) - 539173..540264 (-) 1092 WP_069964004.1 DNA cytosine methyltransferase -
  QNK10_RS02845 (QNK10_02860) - 540319..541653 (-) 1335 WP_196219418.1 LlaJI family restriction endonuclease -
  QNK10_RS02850 (QNK10_02865) - 541653..543383 (-) 1731 WP_069964006.1 AAA family ATPase -

Sequence

Protein


Download         Length: 381 a.a.        Molecular weight: 45266.84 Da        Isoelectric Point: 5.4113

>NTDB_id=765791 QNK10_RS02835 WP_155118109.1 537869..539014(+) (rapF) [Bacillus subtilis strain ZKY05]
MEPVFLMKGKIPYDLVTKKLNAWYTAIKNDRVEQAENIKQEVEMELKSIEENQDALLYYQLLEFRHEIMLSYMESKRIDN
LTSTYETIKEIEEQGQLTGMLEYYFYFFKGMYEFRRKELTTAISAYRVAETKLSEVEDEIEKAEFFFKVSYVYYYMKQTY
FSMNYANRALNIFKDYDEYAVQTIRCQFIVAGNYIDSMEFEKALNVFFNSLDVAKSINSDHLIGMSHINIGICFDELKQY
EDAATHLEISLKLLEKKNNSFLPKALFILTHVKAKQNDLKASLTYFKKGRFYSKINKDLEYDAKFKILEGLYFSNGEYQL
IEDAFAYLESKKMFADVENYAIDVGDFFHERGKLLLSNEYYRMSIEARRKIKKGEIKHENL

Nucleotide


Download         Length: 1146 bp        

>NTDB_id=765791 QNK10_RS02835 WP_155118109.1 537869..539014(+) (rapF) [Bacillus subtilis strain ZKY05]
GTGGAGCCGGTTTTCTTGATGAAGGGGAAGATTCCATATGATCTTGTTACTAAAAAATTAAATGCTTGGTATACAGCGAT
CAAAAACGATCGTGTGGAACAAGCGGAAAATATTAAACAAGAAGTAGAAATGGAGCTAAAAAGTATTGAAGAAAATCAAG
ATGCTTTGTTGTATTATCAGTTATTAGAATTTAGACATGAAATAATGTTGAGTTATATGGAATCAAAAAGAATTGACAAT
CTGACAAGTACTTATGAAACAATTAAGGAGATAGAAGAGCAAGGGCAATTGACAGGTATGCTTGAATATTATTTCTATTT
TTTTAAGGGGATGTATGAGTTCAGGAGAAAAGAGTTAACAACAGCGATCAGTGCTTACAGAGTAGCTGAAACTAAGTTAT
CGGAGGTAGAGGATGAGATAGAGAAAGCTGAATTTTTCTTTAAGGTGTCGTATGTTTACTATTATATGAAGCAAACTTAC
TTCTCAATGAATTATGCAAATCGAGCACTTAACATATTTAAAGATTATGATGAATATGCTGTTCAAACAATTCGGTGTCA
GTTTATTGTTGCAGGCAATTATATTGATTCGATGGAATTTGAAAAGGCCCTCAATGTCTTTTTTAATTCACTTGACGTTG
CAAAAAGTATAAATAGTGATCATCTAATTGGGATGTCTCATATAAATATTGGCATCTGTTTTGATGAGTTAAAGCAATAT
GAAGATGCAGCGACTCATTTAGAAATATCCTTGAAATTGCTTGAAAAGAAAAATAATTCATTTTTACCAAAGGCTTTGTT
TATTTTGACACATGTGAAGGCAAAACAGAACGATTTAAAAGCATCTTTAACATATTTTAAAAAAGGTCGATTCTATTCAA
AAATAAATAAAGATCTTGAATATGATGCAAAATTTAAAATCTTAGAAGGACTTTACTTTTCTAATGGTGAATATCAACTC
ATAGAAGATGCATTTGCATATCTTGAATCGAAAAAGATGTTTGCTGATGTTGAAAATTATGCAATTGATGTGGGTGATTT
TTTTCATGAACGAGGAAAATTATTACTGTCTAATGAATATTATCGTATGAGTATTGAAGCAAGACGTAAAATCAAAAAAG
GAGAGATTAAACATGAAAATTTGTAG

Domains

Predicted by InterProScan.

response regulator aspartate phosphatase H, N terminal (RapH_N)

(10-70)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapF Bacillus subtilis subsp. subtilis str. 168

38.133

98.425

0.375
  rapC Bacillus subtilis subsp. subtilis str. 168

37.234

98.688

0.367