Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | NH10_RS02715 | Genome accession | NZ_CP114381 |
| Coordinates | 554957..555310 (-) | Length | 117 a.a. |
| NCBI ID | WP_002014678.1 | Uniprot ID | A0A0D5YEH0 |
| Organism | Acinetobacter baumannii strain AB6870155 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 552591..583927 | 554957..555310 | within | 0 |
Gene organization within MGE regions
Location: 552591..583927
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NH10_RS02695 (NH10_000511) | - | 552591..553658 (+) | 1068 | WP_000107854.1 | site-specific integrase | - |
| NH10_RS02700 (NH10_000512) | - | 553686..553982 (-) | 297 | WP_000218943.1 | hypothetical protein | - |
| NH10_RS02705 (NH10_000513) | - | 553979..554200 (-) | 222 | WP_000424605.1 | hypothetical protein | - |
| NH10_RS02710 (NH10_000514) | - | 554210..554947 (-) | 738 | WP_000125747.1 | 3'-5' exonuclease | - |
| NH10_RS02715 (NH10_000515) | ssb | 554957..555310 (-) | 354 | WP_002014678.1 | single-stranded DNA-binding protein | Machinery gene |
| NH10_RS02720 (NH10_000516) | - | 555298..555615 (-) | 318 | WP_000049658.1 | hypothetical protein | - |
| NH10_RS02725 (NH10_000517) | - | 555608..555778 (-) | 171 | WP_106908016.1 | hypothetical protein | - |
| NH10_RS02730 (NH10_000518) | - | 555768..556319 (-) | 552 | WP_001178668.1 | hypothetical protein | - |
| NH10_RS02735 (NH10_000519) | - | 556385..556717 (-) | 333 | WP_000632296.1 | hypothetical protein | - |
| NH10_RS02740 (NH10_000520) | - | 556714..559452 (-) | 2739 | WP_002014340.1 | toprim domain-containing protein | - |
| NH10_RS02745 (NH10_000521) | - | 559546..559737 (-) | 192 | WP_001043481.1 | hypothetical protein | - |
| NH10_RS02750 (NH10_000522) | - | 559830..560171 (+) | 342 | WP_000786719.1 | helix-turn-helix transcriptional regulator | - |
| NH10_RS02755 (NH10_000523) | - | 560216..560431 (-) | 216 | WP_000556351.1 | hypothetical protein | - |
| NH10_RS02760 (NH10_000524) | - | 560556..561371 (-) | 816 | WP_001094886.1 | Rha family transcriptional regulator | - |
| NH10_RS02765 (NH10_000525) | - | 561479..561673 (-) | 195 | WP_000696053.1 | hypothetical protein | - |
| NH10_RS02770 (NH10_000526) | - | 561983..562861 (+) | 879 | WP_000417952.1 | BRCT domain-containing protein | - |
| NH10_RS02775 (NH10_000527) | - | 562861..563142 (+) | 282 | WP_000713873.1 | hypothetical protein | - |
| NH10_RS02780 (NH10_000528) | - | 563458..563658 (-) | 201 | WP_000130085.1 | TraR/DksA C4-type zinc finger protein | - |
| NH10_RS02785 (NH10_000529) | - | 563655..563894 (-) | 240 | WP_000113725.1 | ogr/Delta-like zinc finger family protein | - |
| NH10_RS02790 (NH10_000530) | - | 564024..565337 (-) | 1314 | WP_000483061.1 | contractile injection system protein, VgrG/Pvc8 family | - |
| NH10_RS02795 (NH10_000531) | - | 565338..565778 (-) | 441 | WP_000979757.1 | phage tail protein | - |
| NH10_RS02800 (NH10_000532) | - | 565784..568234 (-) | 2451 | WP_000774268.1 | phage tail tape measure protein | - |
| NH10_RS19435 | - | 568248..568361 (-) | 114 | WP_002013839.1 | GpE family phage tail protein | - |
| NH10_RS02805 (NH10_000533) | - | 568388..568729 (-) | 342 | WP_001071615.1 | phage tail assembly protein | - |
| NH10_RS02810 (NH10_000534) | - | 568796..569314 (-) | 519 | WP_001207612.1 | phage major tail tube protein | - |
| NH10_RS02815 (NH10_000535) | - | 569327..570502 (-) | 1176 | WP_000963361.1 | phage tail sheath protein | - |
| NH10_RS02820 (NH10_000536) | - | 570652..572604 (-) | 1953 | WP_000729646.1 | phage tail protein | - |
| NH10_RS02825 (NH10_000537) | - | 572616..573221 (-) | 606 | WP_001050805.1 | phage tail protein I | - |
| NH10_RS02830 (NH10_000538) | - | 573221..574123 (-) | 903 | WP_000109738.1 | baseplate J/gp47 family protein | - |
| NH10_RS02835 (NH10_000539) | - | 574120..574467 (-) | 348 | WP_000987745.1 | GPW/gp25 family protein | - |
| NH10_RS02840 (NH10_000540) | - | 574464..575096 (-) | 633 | WP_000990625.1 | phage baseplate assembly protein V | - |
| NH10_RS02845 (NH10_000541) | - | 575169..575618 (-) | 450 | WP_001059843.1 | phage virion morphogenesis protein | - |
| NH10_RS02850 (NH10_000542) | - | 575615..576142 (-) | 528 | WP_000742888.1 | phage tail protein | - |
| NH10_RS02855 (NH10_000543) | - | 576139..576969 (-) | 831 | WP_000600982.1 | N-acetylmuramidase family protein | - |
| NH10_RS02860 (NH10_000544) | - | 576966..577235 (-) | 270 | WP_000571491.1 | phage holin family protein | - |
| NH10_RS02865 (NH10_000545) | - | 577232..577582 (-) | 351 | WP_001114936.1 | putative holin | - |
| NH10_RS02870 (NH10_000546) | - | 577591..577800 (-) | 210 | WP_000659474.1 | tail protein X | - |
| NH10_RS02875 (NH10_000547) | - | 577801..578253 (-) | 453 | WP_000015691.1 | head completion/stabilization protein | - |
| NH10_RS02880 (NH10_000548) | gpM | 578357..579103 (-) | 747 | WP_000950641.1 | phage terminase small subunit | - |
| NH10_RS02885 (NH10_000549) | - | 579114..580103 (-) | 990 | WP_001243259.1 | phage major capsid protein, P2 family | - |
| NH10_RS02890 (NH10_000550) | - | 580156..580983 (-) | 828 | WP_000748563.1 | GPO family capsid scaffolding protein | - |
| NH10_RS02895 (NH10_000551) | - | 581121..582929 (+) | 1809 | WP_000289874.1 | terminase family protein | - |
| NH10_RS02900 (NH10_000552) | - | 582929..583927 (+) | 999 | WP_001284079.1 | phage portal protein | - |
Sequence
Protein
Download Length: 117 a.a. Molecular weight: 13365.13 Da Isoelectric Point: 9.7939
>NTDB_id=765787 NH10_RS02715 WP_002014678.1 554957..555310(-) (ssb) [Acinetobacter baumannii strain AB6870155]
MRGINKVILVGMLGANPIPKQFQNGGSYAQFSIATSEKYQDKRTGDWIENTEWHRIVAHNRLGEIACQFLKKGSKVYIEG
SLHTRKWTDQNNQERYVTEVRAITFQSLDSLPQANPV
MRGINKVILVGMLGANPIPKQFQNGGSYAQFSIATSEKYQDKRTGDWIENTEWHRIVAHNRLGEIACQFLKKGSKVYIEG
SLHTRKWTDQNNQERYVTEVRAITFQSLDSLPQANPV
Nucleotide
Download Length: 354 bp
>NTDB_id=765787 NH10_RS02715 WP_002014678.1 554957..555310(-) (ssb) [Acinetobacter baumannii strain AB6870155]
ATGCGCGGAATAAATAAAGTGATCTTGGTTGGAATGCTTGGTGCTAACCCAATTCCTAAACAATTTCAAAACGGTGGCTC
CTATGCTCAGTTTTCAATTGCCACTTCAGAAAAATACCAGGACAAACGCACTGGAGATTGGATTGAAAATACTGAGTGGC
ATCGGATTGTGGCTCACAACCGCCTAGGTGAAATTGCCTGTCAATTTCTCAAAAAAGGTTCAAAAGTTTATATCGAAGGC
TCATTACATACCCGGAAATGGACTGACCAAAATAATCAAGAACGTTACGTAACTGAAGTTAGAGCCATTACATTTCAATC
GCTCGATAGCTTGCCACAAGCAAACCCGGTTTAA
ATGCGCGGAATAAATAAAGTGATCTTGGTTGGAATGCTTGGTGCTAACCCAATTCCTAAACAATTTCAAAACGGTGGCTC
CTATGCTCAGTTTTCAATTGCCACTTCAGAAAAATACCAGGACAAACGCACTGGAGATTGGATTGAAAATACTGAGTGGC
ATCGGATTGTGGCTCACAACCGCCTAGGTGAAATTGCCTGTCAATTTCTCAAAAAAGGTTCAAAAGTTTATATCGAAGGC
TCATTACATACCCGGAAATGGACTGACCAAAATAATCAAGAACGTTACGTAACTGAAGTTAGAGCCATTACATTTCAATC
GCTCGATAGCTTGCCACAAGCAAACCCGGTTTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Glaesserella parasuis strain SC1401 |
55.455 |
94.017 |
0.521 |
| ssb | Vibrio cholerae strain A1552 |
54.545 |
84.615 |
0.462 |
| ssb | Neisseria gonorrhoeae MS11 |
42.857 |
89.744 |
0.385 |
| ssb | Neisseria meningitidis MC58 |
42.857 |
89.744 |
0.385 |