Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   O2604_RS25010 Genome accession   NZ_CP114374
Coordinates   5323082..5323639 (+) Length   185 a.a.
NCBI ID   WP_003119423.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain Jade-X     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5318082..5328639
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  O2604_RS24990 (O2604_24990) pilR 5319358..5320695 (+) 1338 WP_003094694.1 two-component system response regulator PilR Regulator
  O2604_RS24995 (O2604_24995) thiO 5320741..5321835 (-) 1095 WP_031806184.1 glycine oxidase ThiO -
  O2604_RS25000 (O2604_25000) - 5321970..5322479 (+) 510 WP_003102595.1 GspH/FimT family pseudopilin -
  O2604_RS25005 (O2604_25005) - 5322585..5323091 (+) 507 WP_003102598.1 GspH/FimT family pseudopilin -
  O2604_RS25010 (O2604_25010) pilV 5323082..5323639 (+) 558 WP_003119423.1 type 4a pilus minor pilin PilV Machinery gene
  O2604_RS25015 (O2604_25015) pilW 5323636..5324460 (+) 825 WP_004352757.1 type 4a pilus minor pilin PilW -
  O2604_RS25020 (O2604_25020) pilX 5324457..5325044 (+) 588 WP_124715852.1 type 4a pilus minor pilin PilX -
  O2604_RS25025 (O2604_25025) pilY1 5325056..5328547 (+) 3492 WP_015648053.1 type 4a pilus biogenesis protein PilY1 -

Sequence

Protein


Download         Length: 185 a.a.        Molecular weight: 20061.15 Da        Isoelectric Point: 8.2255

>NTDB_id=765738 O2604_RS25010 WP_003119423.1 5323082..5323639(+) (pilV) [Pseudomonas aeruginosa strain Jade-X]
MLLKSRHRSLHQSGFSMIEVLVALLLISIGVLGMIAMQGKTIQYTADSVERNKAAMLGSNLLESMRASPKALYDVKDQMA
TQSDFFKAKGSAFPTAPSSCTPLPDAIKDRLGCWAEQVKNELPGAGDLLKSDYYICRSSKPGDCDGKGSMLEIRLAWRGK
QGACVNAADSSADTSLCYYTLRVEP

Nucleotide


Download         Length: 558 bp        

>NTDB_id=765738 O2604_RS25010 WP_003119423.1 5323082..5323639(+) (pilV) [Pseudomonas aeruginosa strain Jade-X]
ATGCTATTGAAATCGCGACACAGGTCGCTGCACCAATCCGGCTTCAGCATGATCGAAGTGCTGGTCGCCCTGCTGCTTAT
CAGCATCGGCGTGCTGGGCATGATCGCCATGCAGGGCAAGACCATCCAGTACACCGCCGACTCGGTCGAGCGCAACAAGG
CAGCCATGCTCGGCAGCAACCTGCTGGAAAGCATGCGGGCGAGCCCGAAGGCGCTGTACGACGTCAAGGACCAGATGGCC
ACGCAATCCGACTTCTTCAAGGCCAAGGGGTCGGCGTTCCCCACCGCGCCGTCCTCCTGCACGCCATTGCCCGACGCGAT
CAAGGACCGCCTGGGATGCTGGGCGGAACAGGTGAAGAACGAACTGCCAGGCGCTGGCGACCTGCTGAAGAGCGACTACT
ACATCTGCCGCAGCTCGAAGCCGGGCGACTGCGACGGCAAGGGCTCCATGCTGGAAATCCGCCTTGCCTGGCGCGGCAAG
CAAGGCGCCTGCGTCAACGCCGCCGACAGCAGCGCCGACACCTCCCTCTGCTACTACACCCTCAGGGTCGAGCCATGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(11-34)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Pseudomonas aeruginosa PAK

99.459

100

0.995