Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   OZ656_RS05835 Genome accession   NZ_CP114373
Coordinates   1254302..1255345 (+) Length   347 a.a.
NCBI ID   WP_011785554.1    Uniprot ID   -
Organism   Marinobacter sp. LM1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1249302..1260345
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OZ656_RS05815 (OZ656_05780) - 1251108..1251731 (-) 624 WP_023009328.1 TIGR04282 family arsenosugar biosynthesis glycosyltransferase -
  OZ656_RS05820 (OZ656_05785) - 1251728..1252432 (-) 705 WP_023009327.1 TIGR04283 family arsenosugar biosynthesis glycosyltransferase -
  OZ656_RS05825 (OZ656_05790) - 1252506..1253606 (+) 1101 WP_278349898.1 FAD-dependent oxidoreductase -
  OZ656_RS05830 (OZ656_05795) - 1253644..1254144 (+) 501 WP_023009325.1 nicotinamide-nucleotide amidohydrolase family protein -
  OZ656_RS05835 (OZ656_05800) recA 1254302..1255345 (+) 1044 WP_011785554.1 recombinase RecA Machinery gene
  OZ656_RS05840 (OZ656_05805) - 1255378..1255839 (+) 462 WP_014420968.1 flavodoxin family protein -
  OZ656_RS05845 (OZ656_05810) - 1255840..1256217 (-) 378 WP_031210250.1 PilZ domain-containing protein -
  OZ656_RS05850 (OZ656_05815) - 1256456..1258864 (+) 2409 WP_011785551.1 Lon protease family protein -
  OZ656_RS05855 (OZ656_05820) fixJ 1258903..1259523 (+) 621 WP_014420970.1 response regulator FixJ -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 37425.01 Da        Isoelectric Point: 5.5419

>NTDB_id=765698 OZ656_RS05835 WP_011785554.1 1254302..1255345(+) (recA) [Marinobacter sp. LM1]
MEDNRKKALGAALSQIERQFGKGAVMKMGDQPREAIPAVSTGSLGLDVALGIGGLPYGRIVEIYGPESSGKTTLTLQVIA
EAQKQGKTCAFVDAEHALDPVYAEKLGVNVDELLVSQPDTGEQALEIADMLVRSNAVDVIIVDSVAALTPKAEIEGEMGD
SHVGLQARLMSQALRKLTGNVKHANCLMVFINQIRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRIGSVKDGDEVVGNE
TRVKVVKNKVSPPFRQAEFQIMYGKGIYHMAEVLDMGVKEGFVDKSGAWYAYNGDKIGQGKANACKFLEENLDIANEIEA
KVRDKLMPKPVKKETAEAPAEANGELL

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=765698 OZ656_RS05835 WP_011785554.1 1254302..1255345(+) (recA) [Marinobacter sp. LM1]
ATGGAAGATAACCGCAAGAAAGCACTCGGCGCAGCGTTGAGCCAGATCGAACGCCAGTTCGGTAAAGGTGCCGTAATGAA
GATGGGCGACCAGCCCCGTGAGGCGATTCCTGCCGTATCCACCGGCTCTCTTGGGCTGGATGTTGCTCTGGGTATTGGTG
GTCTTCCTTACGGTCGGATCGTTGAGATTTACGGCCCGGAGAGCTCCGGTAAAACCACGCTGACTTTGCAGGTTATCGCG
GAAGCGCAAAAACAGGGTAAAACCTGTGCCTTTGTGGATGCCGAGCACGCTCTGGACCCGGTTTATGCGGAAAAGCTGGG
TGTTAACGTTGATGAGCTGCTGGTTTCCCAGCCGGATACCGGTGAGCAGGCGCTGGAAATCGCCGACATGCTCGTGCGCT
CGAACGCGGTGGACGTGATCATTGTCGATTCGGTTGCGGCGCTGACCCCGAAAGCGGAAATTGAAGGCGAAATGGGCGAC
AGCCACGTGGGTCTTCAGGCTCGCCTGATGTCACAGGCACTGCGCAAGCTTACCGGTAATGTGAAGCACGCCAATTGCCT
GATGGTGTTCATCAACCAGATCCGTATGAAGATTGGCGTTATGTTCGGTAGCCCCGAGACTACCACCGGTGGTAACGCCC
TGAAATTCTACTCCTCTGTGCGCCTTGATATTCGCCGTATCGGTTCGGTGAAAGACGGCGACGAAGTGGTGGGCAACGAA
ACCCGCGTAAAAGTCGTCAAGAACAAGGTATCGCCGCCGTTCCGGCAGGCAGAATTCCAGATCATGTACGGTAAGGGCAT
CTACCACATGGCGGAAGTGCTCGACATGGGCGTGAAAGAAGGCTTTGTGGACAAGTCCGGTGCCTGGTACGCCTATAACG
GCGACAAGATCGGCCAGGGCAAAGCAAACGCTTGTAAGTTCCTGGAAGAGAACCTGGATATCGCCAATGAAATCGAGGCT
AAAGTGCGTGACAAGCTGATGCCCAAGCCGGTCAAGAAAGAGACGGCGGAGGCTCCTGCTGAAGCCAATGGCGAACTGCT
ATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

78.261

99.424

0.778
  recA Acinetobacter baylyi ADP1

70.605

100

0.706
  recA Glaesserella parasuis strain SC1401

72.619

96.83

0.703
  recA Vibrio cholerae strain A1552

69.971

98.847

0.692
  recA Vibrio cholerae O1 biovar El Tor strain E7946

69.971

98.847

0.692
  recA Ralstonia pseudosolanacearum GMI1000

70.588

97.983

0.692
  recA Acinetobacter baumannii D1279779

72.477

94.236

0.683
  recA Neisseria gonorrhoeae MS11

72.531

93.372

0.677
  recA Neisseria gonorrhoeae MS11

72.531

93.372

0.677
  recA Neisseria gonorrhoeae strain FA1090

72.531

93.372

0.677
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.303

94.236

0.597
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.862

95.965

0.594
  recA Bacillus subtilis subsp. subtilis str. 168

63.863

92.507

0.591
  recA Helicobacter pylori 26695

60.534

97.118

0.588
  recA Helicobacter pylori strain NCTC11637

60.534

97.118

0.588
  recA Latilactobacillus sakei subsp. sakei 23K

60.559

92.795

0.562
  recA Streptococcus mutans UA159

59.077

93.66

0.553
  recA Lactococcus lactis subsp. cremoris KW2

58.462

93.66

0.548
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

58.025

93.372

0.542
  recA Streptococcus pneumoniae R6

57.669

93.948

0.542
  recA Streptococcus pneumoniae TIGR4

57.669

93.948

0.542
  recA Streptococcus pneumoniae D39

57.669

93.948

0.542
  recA Streptococcus pneumoniae Rx1

57.669

93.948

0.542
  recA Streptococcus pyogenes NZ131

57.012

94.524

0.539
  recA Streptococcus mitis NCTC 12261

57.585

93.084

0.536
  recA Streptococcus mitis SK321

57.276

93.084

0.533