Detailed information    

insolico Bioinformatically predicted

Overview

Name   lrpC   Type   Machinery gene
Locus tag   QNK07_RS02780 Genome accession   NZ_CP125981
Coordinates   530315..530749 (+) Length   144 a.a.
NCBI ID   WP_003246585.1    Uniprot ID   A0ABU0V5G7
Organism   Bacillus subtilis strain ZKY06     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 525315..535749
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QNK07_RS02750 (QNK07_02770) ydaD 525962..526822 (+) 861 WP_032722917.1 SDR family oxidoreductase -
  QNK07_RS02755 (QNK07_02775) lyxE 526838..527341 (+) 504 WP_003234400.1 D-lyxose ketol-isomerase -
  QNK07_RS02760 (QNK07_02780) ydaF 527429..527980 (+) 552 WP_014478866.1 GNAT family N-acetyltransferase -
  QNK07_RS02765 (QNK07_02785) ydaG 528058..528480 (+) 423 WP_003234396.1 pyridoxamine 5'-phosphate oxidase family protein -
  QNK07_RS02770 (QNK07_02790) amj 528986..529795 (+) 810 WP_032722918.1 lipid II flippase Amj -
  QNK07_RS02775 (QNK07_02795) ydzA 529840..530130 (-) 291 WP_015252794.1 DUF3817 domain-containing protein -
  QNK07_RS02780 (QNK07_02800) lrpC 530315..530749 (+) 435 WP_003246585.1 transcriptional regulator LrpC Machinery gene
  QNK07_RS02785 (QNK07_02805) topB 530814..532997 (+) 2184 WP_029317313.1 DNA topoisomerase III -
  QNK07_RS02790 (QNK07_02810) ephJ 533200..534288 (+) 1089 WP_003246551.1 lipoprotein -
  QNK07_RS02795 (QNK07_02815) epsK 534269..535120 (+) 852 WP_003246541.1 cyclic-di-GMP receptor EpsK -

Sequence

Protein


Download         Length: 144 a.a.        Molecular weight: 16450.03 Da        Isoelectric Point: 7.7037

>NTDB_id=765641 QNK07_RS02780 WP_003246585.1 530315..530749(+) (lrpC) [Bacillus subtilis strain ZKY06]
MKLDQIDLNIIEELKKDSRLSMRELGRKIKLSPPSVTERVRQLESFGIIKQYTLEVDQKKLGLPVSCIVEATVKNADYER
FKSYIQTLPNIEFCYRIAGAACYMLKINAESLEAVEDFINKTSPYAQTVTHVIFSEIDTKNGRG

Nucleotide


Download         Length: 435 bp        

>NTDB_id=765641 QNK07_RS02780 WP_003246585.1 530315..530749(+) (lrpC) [Bacillus subtilis strain ZKY06]
ATGAAACTTGACCAGATTGATCTGAATATCATTGAGGAGCTTAAGAAGGACAGCCGTTTGTCGATGAGGGAATTAGGCAG
AAAAATTAAGCTGTCGCCTCCATCTGTGACAGAACGGGTAAGACAGCTTGAATCGTTTGGCATCATCAAGCAATACACGC
TGGAGGTCGACCAGAAAAAACTTGGGCTTCCCGTTTCCTGTATTGTGGAAGCAACCGTTAAAAACGCGGATTACGAGCGG
TTCAAAAGCTATATTCAAACATTGCCGAATATTGAATTTTGCTACCGGATTGCAGGTGCAGCCTGCTATATGCTGAAAAT
CAATGCCGAAAGCCTCGAAGCGGTAGAAGATTTCATTAACAAAACATCGCCCTACGCGCAAACCGTCACTCACGTCATTT
TCTCAGAAATTGACACGAAAAACGGGCGCGGTTAG

Domains

Predicted by InterProScan.

Lrp/AsnC ligand binding domain (AsnC_trans_reg)

(70-135)

Winged helix-turn-helix DNA-binding (HTH_24)

(3-50)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  lrpC Bacillus subtilis subsp. subtilis str. 168

100

100

1