Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   H7K53_RS17370 Genome accession   NZ_AP022077
Coordinates   3582029..3582847 (-) Length   272 a.a.
NCBI ID   WP_000149376.1    Uniprot ID   A0A009TDY3
Organism   Acinetobacter baumannii strain WP4-W18-ESBL-11     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3577029..3587847
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H7K53_RS17355 (WP4W18E11_33970) pilE 3577246..3577671 (-) 426 WP_000788337.1 type IV pilin protein Machinery gene
  H7K53_RS17360 (WP4W18E11_33980) pilY2 3577668..3578150 (-) 483 WP_001046423.1 type IV pilin protein Machinery gene
  H7K53_RS17365 (WP4W18E11_33990) pilY1 3578163..3582017 (-) 3855 WP_000768954.1 PilC/PilY family type IV pilus protein Machinery gene
  H7K53_RS17370 (WP4W18E11_34000) pilX 3582029..3582847 (-) 819 WP_000149376.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  H7K53_RS17375 (WP4W18E11_34010) pilW 3582844..3583845 (-) 1002 WP_000079197.1 PilW family protein Machinery gene
  H7K53_RS17380 (WP4W18E11_34020) pilV 3583846..3584406 (-) 561 WP_002194578.1 type IV pilus modification protein PilV Machinery gene
  H7K53_RS17385 (WP4W18E11_34030) fimU 3584400..3584873 (-) 474 WP_001214065.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  H7K53_RS17390 (WP4W18E11_34040) ispH 3585043..3585993 (-) 951 WP_004742164.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  H7K53_RS17395 (WP4W18E11_34050) gmk 3586116..3586745 (+) 630 WP_000015937.1 guanylate kinase -
  H7K53_RS17400 (WP4W18E11_34060) rpoZ 3586818..3587096 (+) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  H7K53_RS17405 - 3587135..3587265 (+) 131 Protein_3412 hypothetical protein -

Sequence

Protein


Download         Length: 272 a.a.        Molecular weight: 28858.69 Da        Isoelectric Point: 5.2557

>NTDB_id=76546 H7K53_RS17370 WP_000149376.1 3582029..3582847(-) (pilX) [Acinetobacter baumannii strain WP4-W18-ESBL-11]
MTHLNYKNIKGRSKETGATLIVVLIILLIVISVGVLAIRVAIVSLKVATNSQVGQLNFQSSDTPLELIVQMNPTTLTNIT
NVIGAALKAHESNPGAEYNFCYKPTSTSVSFAQTRGASLLRAGSANNAVVEDGGVAGFCDLTSDYGSNRQAVVTQVAVSI
PTDAMADIPGSNLPRDINLSEGTQLPKSMLSTQRIRVITTAFLPAYASTSLETLQSDCLSTSSAKISDNFDSALTDKQTL
ADCLANYNVPFSTQVQEFNYTNKLTEITAPGS

Nucleotide


Download         Length: 819 bp        

>NTDB_id=76546 H7K53_RS17370 WP_000149376.1 3582029..3582847(-) (pilX) [Acinetobacter baumannii strain WP4-W18-ESBL-11]
ATGACCCATTTAAATTATAAAAATATTAAAGGTCGATCTAAGGAAACGGGTGCCACACTTATTGTTGTACTTATTATTTT
ATTGATTGTTATTTCTGTCGGGGTTTTGGCAATAAGAGTAGCGATTGTTTCTCTAAAAGTTGCAACTAATAGCCAAGTTG
GCCAATTAAACTTTCAATCTTCAGATACTCCGTTAGAGCTTATTGTACAGATGAACCCAACCACATTGACAAATATTACC
AATGTGATTGGAGCAGCACTGAAAGCACATGAAAGTAACCCTGGTGCGGAATATAACTTTTGCTATAAACCAACTTCTAC
ATCTGTAAGTTTTGCTCAAACTCGGGGGGCAAGTTTGCTTCGAGCTGGCAGCGCTAATAATGCTGTGGTTGAAGATGGTG
GAGTAGCAGGTTTCTGCGATTTAACAAGTGACTATGGGAGTAATCGTCAAGCGGTAGTTACTCAAGTTGCTGTCAGTATC
CCAACCGATGCCATGGCTGATATTCCGGGTTCAAATCTACCTCGGGACATAAATCTTTCCGAAGGAACCCAACTTCCTAA
AAGCATGCTATCTACGCAACGTATTCGGGTTATTACAACAGCGTTTTTACCTGCTTATGCCTCGACTTCTTTAGAAACTC
TGCAATCTGATTGCTTAAGTACGAGTTCCGCAAAAATTAGTGACAACTTTGATAGTGCATTAACGGATAAGCAAACCCTA
GCTGATTGTTTGGCAAACTATAACGTACCTTTTAGTACTCAAGTTCAAGAATTTAACTATACCAATAAGCTGACTGAAAT
CACGGCACCAGGTTCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A009TDY3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

98.897

100

0.989

Multiple sequence alignment