Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   OGU21_RS17130 Genome accession   NZ_CP114305
Coordinates   3618382..3619005 (-) Length   207 a.a.
NCBI ID   WP_070557448.1    Uniprot ID   -
Organism   Klebsiella oxytoca strain 2022CK-00498     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3613382..3624005
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OGU21_RS17115 (OGU21_17115) helD 3613618..3615672 (-) 2055 WP_202030448.1 DNA helicase IV -
  OGU21_RS17120 (OGU21_17120) - 3615795..3616241 (+) 447 WP_004100782.1 YccF domain-containing protein -
  OGU21_RS17125 (OGU21_17125) yccS 3616259..3618394 (+) 2136 WP_105890006.1 YccS family putative transporter -
  OGU21_RS17130 (OGU21_17130) sxy/tfoX 3618382..3619005 (-) 624 WP_070557448.1 TfoX/Sxy family DNA transformation protein Regulator
  OGU21_RS17135 (OGU21_17135) sulA 3619467..3619976 (+) 510 WP_026055887.1 SOS-induced cell division inhibitor SulA -
  OGU21_RS17140 (OGU21_17140) ompA 3620330..3621400 (+) 1071 WP_004100770.1 porin OmpA -
  OGU21_RS17145 (OGU21_17145) matP 3621511..3621963 (-) 453 WP_004100768.1 macrodomain Ter protein MatP -
  OGU21_RS17150 (OGU21_17150) - 3622149..3623906 (+) 1758 WP_202030447.1 AAA family ATPase -

Sequence

Protein


Download         Length: 207 a.a.        Molecular weight: 23716.76 Da        Isoelectric Point: 10.2095

>NTDB_id=765445 OGU21_RS17130 WP_070557448.1 3618382..3619005(-) (sxy/tfoX) [Klebsiella oxytoca strain 2022CK-00498]
MKKLVCLRIHQFRACLSPLGKISCRPLFGGYSLAIDNTVFAMMAEGEIYLRVCEQSAQYRVAHKNPLLKMQKNGRLVALK
YYHIDEGLWRDSKMLFHLSVLSLQTARNEKHRQRHSGRLKNLPNISFHMELQLINSGIKDELTLRKIGAKEAWLRLRKMN
KALTVNVLYSLEGAIAGVHAATLPTQQRQELEEWAAVQVQEMEAYSG

Nucleotide


Download         Length: 624 bp        

>NTDB_id=765445 OGU21_RS17130 WP_070557448.1 3618382..3619005(-) (sxy/tfoX) [Klebsiella oxytoca strain 2022CK-00498]
ATGAAGAAACTCGTATGTCTTAGGATCCATCAGTTTCGGGCATGTTTGTCTCCATTAGGAAAAATAAGCTGTCGGCCCTT
ATTTGGTGGCTATAGCCTGGCGATAGATAATACCGTGTTTGCCATGATGGCTGAGGGGGAGATCTATCTTCGGGTTTGTG
AGCAGAGTGCGCAGTATCGCGTGGCGCATAAAAACCCGCTGTTGAAGATGCAGAAGAATGGTCGTCTGGTTGCGCTTAAG
TACTATCATATAGATGAAGGGCTTTGGCGTGACAGCAAAATGCTTTTTCATTTATCAGTACTATCATTACAGACCGCTCG
CAATGAAAAACATCGGCAGCGACATTCCGGAAGATTAAAGAATCTTCCAAATATTAGTTTTCACATGGAGCTCCAGTTGA
TTAATTCAGGTATCAAAGATGAATTAACGCTGCGAAAAATTGGCGCGAAAGAAGCCTGGCTCAGACTACGAAAAATGAAT
AAAGCGCTAACGGTAAACGTCCTTTATTCATTAGAGGGAGCTATTGCGGGCGTGCATGCGGCCACGCTCCCGACGCAACA
GCGTCAGGAGCTTGAGGAGTGGGCGGCGGTACAGGTACAGGAGATGGAGGCCTACTCAGGTTGA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(15-105)

TfoX C-terminal domain (TfoX_C)

(117-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

52.308

94.203

0.493