Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   OZP15_RS00585 Genome accession   NZ_CP114291
Coordinates   142420..143781 (+) Length   453 a.a.
NCBI ID   WP_269226558.1    Uniprot ID   -
Organism   Flavobacterium eburneipallidum strain IMCC36793     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 137420..148781
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OZP15_RS00565 - 138887..139693 (-) 807 WP_269226554.1 glycogen/starch synthase -
  OZP15_RS00570 panC 139801..140649 (+) 849 WP_269226555.1 pantoate--beta-alanine ligase -
  OZP15_RS00575 panD 140664..141014 (+) 351 WP_281336707.1 aspartate 1-decarboxylase -
  OZP15_RS00580 - 141269..142420 (+) 1152 WP_281336708.1 alpha/beta hydrolase-fold protein -
  OZP15_RS00585 radA 142420..143781 (+) 1362 WP_269226558.1 DNA repair protein RadA Machinery gene
  OZP15_RS00590 - 143795..143932 (+) 138 WP_281336709.1 hypothetical protein -
  OZP15_RS00595 - 144058..144597 (+) 540 WP_269226559.1 hypothetical protein -
  OZP15_RS00600 dinB 144606..145688 (-) 1083 WP_269226560.1 DNA polymerase IV -
  OZP15_RS00605 - 146350..148410 (-) 2061 WP_281336710.1 T9SS type A sorting domain-containing protein -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 49945.32 Da        Isoelectric Point: 6.0339

>NTDB_id=765425 OZP15_RS00585 WP_269226558.1 142420..143781(+) (radA) [Flavobacterium eburneipallidum strain IMCC36793]
MAKVKTTFFCQNCGAQYSKWQGQCNSCKEWNTIAEEIIQKEEKVAWKSESGSTSKAPKPLRINEIDSTQEIRMDTTDGEL
NRVLGGGIVPGSLILLGGEPGIGKSTLLLQISLKLPYKTLYVSGEESQKQIKMRAERITPNGDNCYILTETKTQNIFKQI
EAIEPEIVIIDSIQTLHTDYIESTPGSISQIRETTAELIKFAKETNIPVILIGHITKDGNIAGPKILEHMVDTVLQFEGD
RNHVYRILRSHKNRFGSTAEIGIYEMLGNGLREVSNPSEILISHKDEELSGTAIATTLEGMRPLMIEIQSLVSTAVYGTP
QRSTTGYNAKRLNMILAVLEKRAGFRLGAKDVFLNVTGGISVDDPAIDLAVVAAILSSNEDIPVNKDFCFAGEVGLSGEI
RPVNRVDQRIQEAEKLGFSTIFVSKYNKIALKNSIIKIRLVAKIEDVASELFG

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=765425 OZP15_RS00585 WP_269226558.1 142420..143781(+) (radA) [Flavobacterium eburneipallidum strain IMCC36793]
ATGGCTAAAGTAAAAACTACCTTTTTTTGCCAAAATTGTGGTGCCCAATATTCTAAATGGCAAGGACAATGCAATTCTTG
TAAAGAATGGAACACCATAGCCGAAGAAATTATCCAAAAAGAAGAAAAAGTAGCTTGGAAAAGTGAATCAGGATCTACTT
CTAAAGCTCCAAAACCTTTACGAATTAACGAAATTGACTCCACTCAAGAAATCCGAATGGATACGACTGACGGGGAACTC
AATCGCGTTTTGGGTGGCGGAATTGTTCCAGGTTCTTTAATCCTTTTGGGTGGCGAACCTGGTATTGGAAAAAGTACACT
TTTACTTCAAATTTCTTTAAAATTACCCTACAAAACTCTATATGTTTCGGGCGAAGAAAGCCAAAAACAAATAAAAATGC
GTGCCGAAAGAATCACGCCAAATGGAGACAATTGCTACATTCTGACCGAAACCAAAACCCAGAATATCTTTAAACAAATT
GAAGCCATTGAACCCGAAATCGTCATTATCGATTCCATTCAAACGCTTCATACGGATTATATCGAATCGACTCCAGGAAG
TATTTCTCAAATTCGGGAAACCACTGCCGAACTAATCAAATTTGCCAAAGAAACCAATATTCCAGTTATTTTGATTGGTC
ATATTACCAAAGACGGAAACATTGCCGGCCCCAAAATTTTGGAACACATGGTCGATACGGTTTTACAATTTGAAGGCGAT
AGAAATCATGTGTATCGCATTTTGCGTTCGCATAAAAACCGTTTTGGTTCTACTGCCGAAATTGGAATTTATGAAATGCT
GGGCAATGGTTTGCGAGAAGTTTCCAACCCTTCAGAAATATTGATTTCACACAAAGACGAGGAATTATCCGGAACCGCCA
TCGCAACAACCCTCGAAGGAATGCGCCCGCTGATGATAGAAATTCAATCTTTGGTTAGTACCGCAGTTTACGGAACACCG
CAACGCAGCACCACGGGTTACAACGCCAAAAGACTCAACATGATTTTAGCCGTTTTAGAAAAAAGAGCAGGTTTCCGATT
GGGAGCCAAAGACGTTTTCTTGAATGTAACTGGCGGCATTTCAGTAGATGATCCCGCTATTGATTTGGCTGTTGTCGCCG
CCATTTTATCCTCTAACGAAGATATTCCGGTAAATAAAGATTTTTGTTTTGCTGGTGAAGTTGGACTTTCGGGGGAAATT
CGTCCTGTAAACCGCGTGGATCAACGCATTCAAGAAGCTGAAAAACTGGGATTTTCGACTATTTTTGTTTCCAAATACAA
TAAAATCGCCTTGAAAAATAGCATCATAAAAATACGATTGGTGGCGAAAATTGAAGATGTGGCGAGTGAATTGTTCGGAT
AA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(67-219)

Subunit ChlI of Mg-chelatase (ChlI)

(316-427)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus mitis SK321

49.123

100

0.494
  radA Streptococcus pneumoniae Rx1

50.112

98.675

0.494
  radA Streptococcus pneumoniae D39

50.112

98.675

0.494
  radA Streptococcus pneumoniae R6

50.112

98.675

0.494
  radA Streptococcus pneumoniae TIGR4

50.112

98.675

0.494
  radA Streptococcus mitis NCTC 12261

51.288

94.26

0.483
  radA Bacillus subtilis subsp. subtilis str. 168

50.233

94.923

0.477