Detailed information    

insolico Bioinformatically predicted

Overview

Name   tonB2   Type   Machinery gene
Locus tag   H7K53_RS16650 Genome accession   NZ_AP022077
Coordinates   3448080..3448964 (-) Length   294 a.a.
NCBI ID   WP_024437029.1    Uniprot ID   A0A009TCU6
Organism   Acinetobacter baumannii strain WP4-W18-ESBL-11     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3443080..3453964
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H7K53_RS16635 (WP4W18E11_32560) miaB 3444927..3446378 (+) 1452 WP_000218141.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -
  H7K53_RS16640 (WP4W18E11_32570) - 3446416..3447504 (+) 1089 WP_000122983.1 PhoH family protein -
  H7K53_RS16645 (WP4W18E11_32580) ybeY 3447514..3447990 (+) 477 WP_000703571.1 rRNA maturation RNase YbeY -
  H7K53_RS16650 (WP4W18E11_32590) tonB2 3448080..3448964 (-) 885 WP_024437029.1 energy transducer TonB Machinery gene
  H7K53_RS16655 (WP4W18E11_32600) - 3449195..3449866 (+) 672 WP_001193960.1 hypothetical protein -
  H7K53_RS16660 (WP4W18E11_32610) - 3450023..3450736 (+) 714 WP_000201548.1 DUF3108 domain-containing protein -
  H7K53_RS16665 (WP4W18E11_32620) - 3450809..3451384 (+) 576 WP_000543071.1 xanthine phosphoribosyltransferase -
  H7K53_RS16670 (WP4W18E11_32630) wrbA 3451437..3452030 (-) 594 WP_001183361.1 NAD(P)H:quinone oxidoreductase -
  H7K53_RS16675 (WP4W18E11_32640) - 3452318..3453565 (+) 1248 WP_000893466.1 YihY family inner membrane protein -

Sequence

Protein


Download         Length: 294 a.a.        Molecular weight: 33649.60 Da        Isoelectric Point: 9.6000

>NTDB_id=76540 H7K53_RS16650 WP_024437029.1 3448080..3448964(-) (tonB2) [Acinetobacter baumannii strain WP4-W18-ESBL-11]
MLKKRSLSIEPFYYWWQDRVFIAAIILAILLHIFVLLIHFAMPAPSEQSTKEIAISIRPTEDVIKHADFLAQADQQGSGA
FREVHRMSSNSPAPMPSDASTGEAQLETLEKVQQQRKLKFEEKVLMTVLSWQKQAEESQRKKALEQLQSQFQAKAAMVAS
LEAQYLQRQQDFSRQQKIKTVDGIQAKKDASAAYLDKFREKVELYGNRYYPEEAKQQQLKGEVRLMVILNAQGGIRAIRL
LESSGHPVLDEAAKASVRRGAPFGRFDANMKDISELRIIRTWRFDPAEAEFEVH

Nucleotide


Download         Length: 885 bp        

>NTDB_id=76540 H7K53_RS16650 WP_024437029.1 3448080..3448964(-) (tonB2) [Acinetobacter baumannii strain WP4-W18-ESBL-11]
ATGTTGAAAAAAAGAAGTCTATCCATAGAGCCTTTTTATTATTGGTGGCAAGACCGAGTCTTTATCGCTGCAATAATATT
AGCAATCTTACTGCATATTTTTGTGTTGCTCATCCATTTTGCGATGCCTGCGCCGTCAGAACAATCGACTAAAGAAATTG
CAATATCGATTCGTCCTACTGAAGATGTGATCAAGCATGCAGACTTTTTAGCCCAAGCTGATCAACAAGGTTCAGGGGCT
TTTCGGGAAGTTCATCGGATGTCGAGTAACTCTCCAGCGCCTATGCCAAGTGATGCTTCAACAGGAGAAGCTCAGCTAGA
AACTTTAGAAAAAGTGCAGCAACAAAGAAAACTTAAATTTGAAGAAAAAGTACTCATGACTGTATTGAGTTGGCAGAAAC
AAGCAGAGGAGAGCCAAAGAAAAAAAGCACTTGAACAATTACAAAGTCAGTTTCAGGCAAAAGCTGCCATGGTAGCGAGT
CTTGAAGCTCAGTATTTACAACGTCAGCAAGATTTTAGTCGCCAACAAAAAATAAAAACAGTAGATGGTATTCAAGCCAA
GAAAGATGCGTCGGCAGCTTATCTAGATAAATTTCGTGAAAAAGTAGAGCTTTATGGCAACCGTTATTATCCAGAAGAAG
CGAAACAGCAACAGTTAAAAGGTGAAGTTCGCCTTATGGTAATTTTGAATGCTCAAGGGGGAATTCGTGCAATTCGTTTG
CTTGAAAGCTCAGGTCATCCAGTTCTAGATGAAGCAGCAAAGGCATCGGTACGGCGTGGAGCGCCGTTTGGCCGTTTTGA
TGCAAATATGAAAGATATTTCAGAGCTTCGTATCATTCGTACATGGCGTTTTGATCCAGCTGAAGCTGAATTTGAAGTTC
ATTAA

Domains

Predicted by InterproScan.

Gram-negative bacterial TonB protein C-terminal (TonB_C)

(207-284)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A009TCU6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tonB2 Acinetobacter baumannii D1279779

99.32

100

0.993

Multiple sequence alignment