Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   OZP09_RS11735 Genome accession   NZ_CP114285
Coordinates   2875617..2876978 (-) Length   453 a.a.
NCBI ID   WP_281309434.1    Uniprot ID   -
Organism   Flavobacterium flavigenum strain IMCC34775     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2870617..2881978
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OZP09_RS11720 - 2870905..2872725 (+) 1821 WP_281309433.1 histidine kinase -
  OZP09_RS11725 - 2872722..2873471 (+) 750 WP_269233880.1 LytTR family DNA-binding domain-containing protein -
  OZP09_RS11730 - 2873635..2875599 (-) 1965 WP_269233882.1 biosynthetic peptidoglycan transglycosylase -
  OZP09_RS11735 radA 2875617..2876978 (-) 1362 WP_281309434.1 DNA repair protein RadA Machinery gene
  OZP09_RS11740 - 2876978..2878135 (-) 1158 WP_269233883.1 alpha/beta hydrolase-fold protein -
  OZP09_RS11745 panD 2878300..2878650 (-) 351 WP_223682073.1 aspartate 1-decarboxylase -
  OZP09_RS11750 panC 2878665..2879543 (-) 879 WP_281309435.1 pantoate--beta-alanine ligase -
  OZP09_RS11755 - 2879622..2880428 (+) 807 WP_223682071.1 glycogen/starch synthase -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 49814.27 Da        Isoelectric Point: 6.0986

>NTDB_id=765385 OZP09_RS11735 WP_281309434.1 2875617..2876978(-) (radA) [Flavobacterium flavigenum strain IMCC34775]
MSKVKTSFFCQNCGTQYAKWQGQCNACKEWNTIAEEIIQKQEKVAWKSEPTPTGKAPRPLKINEIDSAQEIRMDTTDGEL
NRVLGGGIVPGSLTLLGGEPGIGKSTLLLQISLKLPYKTLYVSGEESQKQIKMRAERITPDSDNCYILTETKTQNIFKQI
EAIQPEIVIIDSIQTLHTDYIESTAGSISQIRETTAELIKFAKETNIPVILIGHITKDGNIAGPKILEHMVDTVLQFEGD
RNHVYRILRSLKNRFGSTAELGIYEMLGSGLREVSNPSEILISHKDEEMSGTAIATTMEGMRSLMIEIQSLVSTAVYGTP
QRSTTGYNAKRLNMILAVLEKRAGFRLGAKDVFLNVTGGISVDDPAIDLAVVAAILSSNEDIPVTKGFCFAGEVGLSGEI
RPVNRVDQRIQEAEKLGFNTIFVSRYNKIALKNTGIKIELVAKIEDVASILFG

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=765385 OZP09_RS11735 WP_281309434.1 2875617..2876978(-) (radA) [Flavobacterium flavigenum strain IMCC34775]
ATGTCTAAAGTTAAAACTTCCTTCTTTTGCCAAAACTGTGGTACACAATATGCCAAATGGCAGGGGCAGTGCAACGCCTG
TAAGGAATGGAATACTATTGCCGAAGAAATTATTCAGAAGCAGGAAAAAGTAGCCTGGAAAAGTGAACCAACCCCAACAG
GAAAAGCACCTCGGCCTTTAAAAATTAATGAAATCGATTCGGCTCAGGAAATCCGAATGGATACTACTGACGGTGAACTG
AACCGGGTACTGGGTGGAGGAATAGTTCCCGGATCTTTAACACTTTTGGGTGGCGAACCCGGGATTGGTAAAAGTACTCT
TTTGCTGCAAATTTCATTAAAATTACCTTACAAAACTTTGTATGTTTCCGGTGAAGAAAGCCAGAAACAAATAAAAATGC
GTGCAGAAAGAATTACGCCAGACAGTGATAATTGTTATATCCTCACGGAAACCAAAACGCAAAATATTTTCAAACAGATT
GAAGCAATTCAGCCTGAAATTGTAATTATTGATTCGATTCAGACACTTCATACTGATTATATCGAATCTACTGCGGGAAG
TATTTCTCAAATTAGGGAAACTACAGCCGAGTTGATCAAATTTGCAAAAGAAACCAATATTCCTGTTATTTTGATCGGGC
ATATTACCAAGGATGGAAATATTGCCGGGCCAAAAATTCTGGAGCATATGGTGGATACCGTTTTACAATTTGAAGGCGAC
AGAAATCATGTTTATCGAATTTTACGTTCCCTAAAAAACCGTTTTGGTTCAACTGCTGAATTGGGCATTTACGAAATGCT
GGGAAGCGGTTTACGAGAAGTAAGCAATCCATCGGAAATTTTGATTTCGCATAAAGATGAAGAAATGTCGGGAACTGCTA
TTGCTACAACTATGGAGGGCATGCGTTCGTTGATGATTGAAATACAATCGCTGGTTAGCACAGCTGTTTACGGAACGCCA
CAACGAAGTACAACAGGTTACAATGCCAAAAGGCTTAATATGATTTTAGCTGTTCTTGAAAAAAGAGCCGGTTTTAGATT
AGGCGCAAAAGACGTTTTCCTGAATGTGACGGGTGGAATTTCTGTTGATGATCCTGCGATTGATTTGGCTGTTGTGGCTG
CCATTTTATCCTCTAATGAAGATATTCCGGTTACAAAAGGTTTCTGTTTTGCCGGTGAAGTAGGTCTTTCGGGTGAAATT
CGACCTGTTAACCGTGTAGATCAGCGTATTCAGGAAGCTGAAAAATTAGGTTTCAATACTATCTTTGTATCCAGATATAA
TAAAATTGCCCTGAAAAATACAGGTATTAAAATTGAACTTGTAGCTAAAATTGAAGATGTGGCAAGTATTCTGTTTGGTT
AA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-35)

Subunit ChlI of Mg-chelatase (ChlI)

(316-427)

AAA domain (AAA_25)

(68-219)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

47.712

100

0.483
  radA Streptococcus pneumoniae Rx1

50.351

94.26

0.475
  radA Streptococcus pneumoniae D39

50.351

94.26

0.475
  radA Streptococcus pneumoniae R6

50.351

94.26

0.475
  radA Streptococcus pneumoniae TIGR4

50.351

94.26

0.475
  radA Streptococcus mitis SK321

50.351

94.26

0.475
  radA Streptococcus mitis NCTC 12261

50.351

94.26

0.475