Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   OZP06_RS08430 Genome accession   NZ_CP114284
Coordinates   1940778..1942139 (-) Length   453 a.a.
NCBI ID   WP_281324480.1    Uniprot ID   -
Organism   Flavobacterium sp. IMCC34518     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1935778..1947139
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OZP06_RS08410 - 1936748..1937002 (+) 255 WP_269224487.1 hypothetical protein -
  OZP06_RS08415 - 1936992..1937258 (+) 267 WP_269224488.1 type II toxin-antitoxin system RelE/ParE family toxin -
  OZP06_RS08420 - 1937421..1938458 (+) 1038 WP_281238281.1 NADP(H)-dependent aldo-keto reductase -
  OZP06_RS08425 - 1938776..1940737 (-) 1962 WP_269224489.1 biosynthetic peptidoglycan transglycosylase -
  OZP06_RS08430 radA 1940778..1942139 (-) 1362 WP_281324480.1 DNA repair protein RadA Machinery gene
  OZP06_RS08435 - 1942142..1943392 (-) 1251 WP_281324481.1 alpha/beta hydrolase-fold protein -
  OZP06_RS08440 panD 1943571..1943921 (-) 351 WP_269224491.1 aspartate 1-decarboxylase -
  OZP06_RS08445 panC 1943927..1944775 (-) 849 WP_269224492.1 pantoate--beta-alanine ligase -
  OZP06_RS08450 - 1944883..1945689 (+) 807 WP_269224493.1 glycogen/starch synthase -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 49806.19 Da        Isoelectric Point: 6.0986

>NTDB_id=765381 OZP06_RS08430 WP_281324480.1 1940778..1942139(-) (radA) [Flavobacterium sp. IMCC34518]
MAKVKTTFFCQNCGAQYAKWQGQCNSCKEWNTIAEEIIQKQEKVAWKSESSSTSKAPKPLRINEIDSAEEIRLDTTDNEL
NRVLGGGIVPGSLILLGGEPGIGKSTLLLQISLKLPYKTLYVSGEESQKQIKMRAERITPNGDNCYILTETKTQNIFKQI
EAIQPEIVIIDSIQTLHTDYIESTAGSISQIRETTAELIKFAKETNIPVILIGHITKDGTIAGPKILEHMVDTVLQFEGD
RNHVYRILRSLKNRFGSTAEIGIYEMLGSGLREVSNPSEILISHKDEELSGTAIATTLEGMRPLMIEIQSLVSTAVYGTP
QRSTTGYNAKRLNMILAVLEKRAGFRLGAKDVFLNVTGGISVDDPAIDLAVVAAILSSNEDIPVNKDFCFAGEVGLSGEI
RPVNRVDQRIQEAEKLGFSTIFVSKYNKIALKNTGIKIQLVAKIEDVASQLFG

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=765381 OZP06_RS08430 WP_281324480.1 1940778..1942139(-) (radA) [Flavobacterium sp. IMCC34518]
ATGGCCAAAGTAAAAACAACCTTTTTTTGCCAGAATTGTGGCGCACAATATGCCAAATGGCAAGGACAGTGCAATTCCTG
CAAAGAATGGAATACTATTGCTGAGGAAATTATTCAAAAACAAGAAAAAGTAGCTTGGAAATCAGAATCTTCATCTACCA
GTAAAGCGCCAAAACCTTTACGAATTAACGAAATTGACAGTGCTGAAGAAATCCGATTGGACACTACCGACAATGAACTA
AACAGAGTCTTGGGTGGCGGAATTGTGCCTGGCTCCTTAATTCTTTTGGGTGGTGAACCAGGAATTGGAAAAAGTACGCT
TTTGCTGCAAATATCTTTAAAACTACCCTACAAAACTTTATACGTTTCGGGTGAAGAAAGCCAAAAGCAAATCAAGATGC
GAGCGGAACGCATCACTCCAAACGGAGACAATTGCTATATTCTTACCGAAACCAAAACACAAAATATCTTCAAACAAATT
GAAGCCATTCAGCCCGAAATTGTAATTATTGATTCGATTCAAACCTTACATACCGATTACATTGAATCTACTGCGGGAAG
TATTTCTCAAATAAGGGAGACTACGGCTGAATTGATCAAATTTGCAAAAGAAACCAATATTCCCGTAATTTTAATTGGTC
ACATTACCAAAGACGGAACTATAGCTGGGCCAAAAATTTTGGAACACATGGTCGATACAGTGTTACAATTTGAAGGTGAT
CGCAACCATGTTTATCGTATTTTGCGCTCGCTAAAAAACCGTTTTGGTTCAACAGCCGAAATCGGAATCTACGAAATGTT
GGGTAGCGGTTTACGAGAAGTATCTAATCCTTCCGAAATACTAATTTCACACAAAGACGAAGAACTGTCGGGAACGGCAA
TTGCCACTACACTCGAAGGCATGCGTCCCTTGATGATCGAAATACAATCACTAGTCAGTACAGCCGTTTACGGAACTCCT
CAGAGAAGTACAACAGGTTACAACGCCAAAAGACTGAATATGATTTTGGCCGTATTAGAAAAAAGAGCAGGTTTCCGATT
GGGAGCCAAAGACGTTTTTCTGAACGTAACTGGAGGAATATCCGTTGATGATCCTGCCATTGATTTGGCTGTAGTTGCCG
CCATTTTATCGTCTAATGAAGATATTCCTGTCAATAAAGACTTTTGTTTTGCAGGTGAAGTGGGACTTTCAGGTGAAATT
CGCCCTGTGAACCGAGTAGATCAACGCATTCAAGAAGCAGAAAAATTAGGATTTTCGACTATTTTTGTATCCAAATACAA
TAAAATTGCCTTAAAAAACACGGGTATAAAAATTCAATTGGTGGCTAAAATCGAAGACGTGGCCAGCCAATTGTTCGGAT
AA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(67-219)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-35)

Subunit ChlI of Mg-chelatase (ChlI)

(316-427)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus mitis SK321

49.781

100

0.501
  radA Streptococcus mitis NCTC 12261

49.781

100

0.501
  radA Bacillus subtilis subsp. subtilis str. 168

48.359

100

0.488
  radA Streptococcus pneumoniae TIGR4

51.522

94.26

0.486
  radA Streptococcus pneumoniae D39

51.522

94.26

0.486
  radA Streptococcus pneumoniae Rx1

51.522

94.26

0.486
  radA Streptococcus pneumoniae R6

51.522

94.26

0.486